Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31826
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.41 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.9  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   2.9  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.7  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   8.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 357  VFVYPYEPTPKESEPFKSVVPDNKPFGYP 271
            + VY + P   +SE F +VV DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 269 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 448
           +G  +  L  + + N +++   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 318 EPFKSVVPDNKPFGYPFDRPVLP 250
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 467 SWTKERFLLTCSTPRTLCL 411
           SW+K  FLLT S  RT+ L
Sbjct: 262 SWSKNDFLLTSSADRTVRL 280


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 399  LPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNK 286
            L + T D   ++ ++FV+  E +P+  E   S++ DNK
Sbjct: 2232 LLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNK 2269


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 182 PIYLTFLTIHQIKRNYNALISKSKRTQTIC 93
           P+Y     +  + R Y  L+S +  TQTIC
Sbjct: 32  PLYCVVCFVSVLCRLYCILMSAASATQTIC 61


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 333 SVHTDRRIQTAGRGIHRMY 389
           S HT RR QT+G+  H+ Y
Sbjct: 76  SGHTKRRSQTSGKKTHQPY 94


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 479 KSTSSWTKERFLLTCSTPRTLCLQ 408
           K  S+ TKE  LL C T  T C Q
Sbjct: 279 KKHSNLTKEELLLRCLTLTTSCRQ 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,638
Number of Sequences: 5004
Number of extensions: 42710
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)