Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TLD2 Cluster: Replication protein A middle subunit; n...   143   2e-33
UniRef50_UPI00015B54AA Cluster: PREDICTED: similar to Replicatio...    38   0.14 
UniRef50_A0CYQ3 Cluster: Chromosome undetermined scaffold_31, wh...    33   2.9  
UniRef50_UPI0000D56B92 Cluster: PREDICTED: similar to CG32556-PA...    32   6.8  
UniRef50_O14248 Cluster: Tip elongation aberrant protein 3; n=1;...    32   6.8  
UniRef50_Q39G72 Cluster: Outer membrane protein,; n=2; Burkholde...    32   8.9  

>UniRef50_Q5TLD2 Cluster: Replication protein A middle subunit; n=1;
           Bombyx mori|Rep: Replication protein A middle subunit -
           Bombyx mori (Silk moth)
          Length = 259

 Score =  143 bits (346), Expect = 2e-33
 Identities = 68/83 (81%), Positives = 68/83 (81%)
 Frame = +3

Query: 252 MWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEXVKIWGTEXXXX 431
           MWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEE VKIWGTE    
Sbjct: 1   MWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEGVKIWGTEIQIV 60

Query: 432 XXXXXXXXXXMQSTKITYTIQDI 500
                     MQSTKITYTIQDI
Sbjct: 61  SIVARIRSIRMQSTKITYTIQDI 83


>UniRef50_UPI00015B54AA Cluster: PREDICTED: similar to Replication
           protein A middle subunit; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to Replication protein A middle
           subunit - Nasonia vitripennis
          Length = 253

 Score = 37.9 bits (84), Expect = 0.14
 Identities = 25/93 (26%), Positives = 36/93 (38%)
 Frame = +3

Query: 219 STNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEX 398
           S NNFD       N     GGF+NTT         K   +R     P++I   +  GE+ 
Sbjct: 2   SWNNFD-------NSTAGEGGFMNTTVNDSTAGEDKANLKRGQNCVPVMIAHLVRYGEK- 53

Query: 399 VKIWGTEXXXXXXXXXXXXXXMQSTKITYTIQD 497
           + +WGT                 STK+++   D
Sbjct: 54  LTVWGTPVRLVTFVGLVRKVEPTSTKVSFEFSD 86


>UniRef50_A0CYQ3 Cluster: Chromosome undetermined scaffold_31, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_31,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 699

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 14/66 (21%), Positives = 36/66 (54%)
 Frame = +1

Query: 148 TTFSIRIGSELFSALYYCCY*KSLQLTILTSTLKQCGMMIRLEVASLTPQINLEILQHLR 327
           T   +R+G   F+ ++YCC     ++ +    + QC +MIR ++  +T    ++ ++ L+
Sbjct: 480 TKKQLRLGINFFTLVFYCCQ-CFQRVQVTRKLINQCDLMIRRDLDIVTILSKIQQIEKLK 538

Query: 328 KRVVER 345
             ++++
Sbjct: 539 ATILDQ 544


>UniRef50_UPI0000D56B92 Cluster: PREDICTED: similar to CG32556-PA,
            isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
            similar to CG32556-PA, isoform A - Tribolium castaneum
          Length = 1027

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +3

Query: 216  SSTNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTATPKKTGR---RAARTAPIVIRQALHS 386
            SST+  + Y  T  NDDP      NT   +     P K GR       +    + ++ + 
Sbjct: 937  SSTDYSETYHTTTRNDDPLRPSVTNTVKSYSKKTIPAKNGRSMETIESSETKSVTKSHYR 996

Query: 387  GEEXVKIWGTE 419
            G+  VK + TE
Sbjct: 997  GDPSVKFYETE 1007


>UniRef50_O14248 Cluster: Tip elongation aberrant protein 3; n=1;
            Schizosaccharomyces pombe|Rep: Tip elongation aberrant
            protein 3 - Schizosaccharomyces pombe (Fission yeast)
          Length = 1125

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 210  EKSSTNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTATPKKT 332
            E+ S NN      +  +D PSGG F    N FGN  T ++T
Sbjct: 992  EEDSFNNASAAHSSKESDIPSGGVFTKYRNHFGNLMTSEET 1032


>UniRef50_Q39G72 Cluster: Outer membrane protein,; n=2; Burkholderia
           cepacia complex|Rep: Outer membrane protein, -
           Burkholderia sp. (strain 383) (Burkholderia cepacia
           (strain ATCC 17760/ NCIB 9086 / R18194))
          Length = 412

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 249 TMWNDDPSGGGFL-NTTNQFGNTATPKK 329
           +MW + P+GGG L N    FG+  TP+K
Sbjct: 229 SMWGNQPNGGGNLVNNIGSFGSETTPQK 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,973,081
Number of Sequences: 1657284
Number of extensions: 8337699
Number of successful extensions: 18359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18352
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)