Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    32   0.044
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    30   0.24 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   3.8  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   5.1  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   5.1  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 210  EKSSTNNFDLYFKTMWNDDPSGGGFLNTTNQFGNTATPKKT 332
            E+ S NN      +  +D PSGG F    N FGN  T ++T
Sbjct: 992  EEDSFNNASAAHSSKESDIPSGGVFTKYRNHFGNLMTSEET 1032


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -2

Query: 431 HYLNFCTPYFHTFFSRMQS-----LPDDYRCCP 348
           HYL+ C+PY  +F  R++S     LPD  + CP
Sbjct: 227 HYLSDCSPYTGSFVQRIRSILTEPLPDISKSCP 259


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 515 LILPVNILDCICYFSALHSNAPDSCNY*HYLNFCTPYFHTFFSRMQSL 372
           ++LP+     + +FS +++    +C Y H+        H FF R++ L
Sbjct: 80  IVLPIPAYHPL-FFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLL 126


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 419 FCTPYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSI 309
           FC+ Y    FS  Q +  D+R    ++T R + C  +
Sbjct: 173 FCSSYQSQVFSPGQKIVFDFRSYNIKATVRTISCVDL 209


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 284 EATSRRIIIPHCFKVE 237
           EA S+  +IP CFK+E
Sbjct: 8   EADSKPAVIPQCFKIE 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,779
Number of Sequences: 5004
Number of extensions: 36959
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)