Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         29   1.7  
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348     29   2.9  
07_03_1476 + 26798812-26798838,26799162-26799237,26799322-268000...    27   6.8  
01_07_0205 - 41978437-41980599,41980805-41981215                       27   8.9  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 395 FFSRMQSLPDDYRCCPCRSTTRFLRC-CSIS 306
           F++   +  DD  CC C S+++ LRC CS S
Sbjct: 507 FYANHPADKDDDGCCSCSSSSKCLRCLCSSS 537


>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
          Length = 662

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 297 NQFGNTATPKKTGRRAARTAPIVIRQALHSGEEXVKIWG 413
           ++ GN   P  +G +  + A  ++  A HSGE  ++ WG
Sbjct: 501 DEIGNRLRPNSSGSQTVQMARALLA-ARHSGERILRCWG 538


>07_03_1476 +
           26798812-26798838,26799162-26799237,26799322-26800055,
           26800397-26800546,26800659-26801042
          Length = 456

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -2

Query: 485 ICYFSALHSNAPDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSIS 306
           +C+F  L         Y ++  + TPY    F  + SL +    CP +S  + L+   +S
Sbjct: 203 VCFFGRLDLVCLPKLEYIYWEIWFTPYAPLSFGSVPSLRELRLACPAQSDFQGLK---LS 259

Query: 305 KLICGV 288
           K++ GV
Sbjct: 260 KVLQGV 265


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 389 SRMQSLPDDYRCCPCRSTTRFLRCCSISKLICGVKEATS-RRIIIPHCFKVE 237
           S + S+PDD        T R   CC + +L   +++  S R + +  CF++E
Sbjct: 559 SWITSIPDDVVYLYNLQTLRLSECCYLKQLPKDLRKMKSLRNLYLDGCFRLE 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,249
Number of Sequences: 37544
Number of extensions: 227002
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)