Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             29   1.7  
SB_50628| Best HMM Match : Abi (HMM E-Value=1.5)                       28   4.0  
SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)           28   5.3  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     28   5.3  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 401  HTFFSRMQSLPDDYRCCPCRSTTRFLRCCSISKLIC 294
            HTFF R    P  +    C   T F+  C I +L+C
Sbjct: 2001 HTFFDRHSKFPPPFFKSLCTKGTFFVAPCGIVRLMC 2036


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 428 YLNFCTPY-FHTFFSRMQS-LPDDYRCCPCRSTTRFLRCCSISKLICGVKEAT 276
           Y+   T Y +H+F S   S +P    C P       +  C + +L CG K  T
Sbjct: 323 YMKMTTDYLYHSFSSNKHSGIPSKVVCQPSTGEGAKVHPCEVKRLDCGCKRNT 375


>SB_50628| Best HMM Match : Abi (HMM E-Value=1.5)
          Length = 151

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 509 LPVNILDCICYFSALHSNAPD 447
           +PV+++ C CYF+A + +AP+
Sbjct: 117 IPVSVVLCCCYFAAKNLSAPE 137


>SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 226 TILTSTLKQCGMMIRLEVASLTPQINLEILQHL 324
           ++L  T+++C  ++ +  ASL P +   ILQ+L
Sbjct: 43  SVLRETIRKCAGVVTVSTASLKPWLVCNILQNL 75


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 371 PDDYRCCPCRSTTRFLRCCSISKLIC 294
           PDDY C  C    R   CC I   +C
Sbjct: 40  PDDYTC--CLMPNRMYGCCPIPNAVC 63


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 419  NSNSVNSCKNQEH*NAKH*NNIYNPR 496
            N+NS+N+C N    N ++ NN  N R
Sbjct: 1743 NNNSINNCNNNNSINNRNNNNSINNR 1768


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 410 PYFHTFFSRMQSLPDDYRCCPCRSTTRFLRCCSIS 306
           P    FF RM   P D  C    ++   L  C+IS
Sbjct: 307 PLLRNFFGRMTRAPQDSSCLSSNTSNISLHFCTIS 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,442
Number of Sequences: 59808
Number of extensions: 277164
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)