Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 377 SLPDDYRCCPCRSTTRFLRCCSISKLIC 294
           S P  Y C P    ++FL C   S LIC
Sbjct: 318 SCPIGYSCAPSNQVSQFLCCRLASSLIC 345


>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = -2

Query: 452 PDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRC-----CPCRSTTRFLRCCSISKLICGV 288
           P S  Y H+   C P   +FF R  SL   Y C     C   S    + C +     C +
Sbjct: 16  PCSMRYSHFGGICCPACASFFRRTVSLNIRYLCKKQNNCSGISKKYHIVCRACRYEKC-I 74

Query: 287 KEATSRRIIIPH 252
           K+A  +R ++ H
Sbjct: 75  KKAGMKRSLVQH 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,372
Number of Sequences: 27780
Number of extensions: 212167
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)