Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31819
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    31   0.35 
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa...    30   0.80 
At5g53110.1 68418.m06599 expressed protein                             27   7.5  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    27   7.5  
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom...    27   7.5  
At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 / c...    27   7.5  

>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 237 LYFKTMWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALH 383
           LYF+   N++   GGF N   +F N  T K  G R +RT+P    + +H
Sbjct: 213 LYFEGANNNN---GGFENEILEFNNGVTRKGRGSRKSRTSPTERERRVH 258


>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
           family protein similar to BRCA1-associated protein 2
           [Homo sapiens] GI:3252872; contains Pfam profiles
           PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
           Zn-finger in ubiquitin-hydrolases and other protein
          Length = 461

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 380 QSLPDDYRCCPCRSTTRFLRCCSISKLICG-VKEATSRR--IIIPHCFKVEVK 231
           Q  P++  CC C++T     C     + CG  KE  +RR      HC+ +E++
Sbjct: 210 QQQPENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELE 262


>At5g53110.1 68418.m06599 expressed protein
          Length = 240

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 338 TTRFLRC--CSISKLICGVKEATSRRIIIPHCFK 243
           T R  RC  C I    CG+K  +SR II  H  K
Sbjct: 204 TWRVPRCSRCEIKGGKCGIKSNSSREIICSHVHK 237


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40
           repeat family protein contains Pfam PF00400: WD domain,
           G-beta repeat; contains Pfam PF00069: Protein kinase
           domain; contains PF02985: HEAT repeat; similar to
           adaptor protein (GI:1817584) [Homo sapiens]; similar to
           VPS15 protein (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 422 NFCTPYFHTFFSRMQSLPDDYRCCPCR 342
           N+ +P+ HT +     LP D R   C+
Sbjct: 301 NYFSPFLHTLYCCWNPLPSDMRVATCQ 327


>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
            domain-containing protein similar to PLU-1 protein
            (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
            musculus]; similar to Retinoblastoma-binding protein 2
            (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
            PF02373: jmjC domain
          Length = 1116

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 500  NILDCICYFSALHSNAPDSCNY*HYLNFCTPYFHTFFSRMQSLPDDY---RCCPCRSTT 333
            ++L CIC     +S +  SC+       C  ++HT+  ++   P  Y    CCP   TT
Sbjct: 1006 SMLHCIC-LKPYNSRSMVSCSQ------CGEWYHTYCLKLHWRPKAYVCSACCPLAETT 1057


>At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 /
           cellulase family protein / (1-4)-beta-mannan
           endohydrolase, putative similar to (1-4)-beta-mannan
           endohydrolase precursor GI:9836826 from [Lycopersicon
           esculentum]
          Length = 411

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 282 FLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEXVKIWG 413
           +LN  N +    T   T  +   T    +RQA   G    +IWG
Sbjct: 45  YLNGFNAYWMMTTAADTASKGRATVTTALRQASAVGMNVARIWG 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,545
Number of Sequences: 28952
Number of extensions: 190480
Number of successful extensions: 370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)