Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31816
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 151 2e-37
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 90 3e-24
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 2.2
08_02_0636 + 19567654-19568859 29 2.9
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.9
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 3.9
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 28 3.9
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 3.9
10_08_0223 - 15986763-15987575 28 5.1
03_04_0184 - 18210875-18212065 28 5.1
06_03_0752 - 24171847-24174321 27 8.9
05_04_0397 - 20937280-20937386,20937494-20939681 27 8.9
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 8.9
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631... 27 8.9
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 151 bits (367), Expect = 2e-37
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = +1
Query: 100 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 279
P GN + G+KIF +CAQCHTV+ G HK GPNL+G FGR++G G+SYS ANK +
Sbjct: 8 PPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVI 67
Query: 280 WNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 411
W ++TL++YL NPKKYIPGTKMVF GLKK ERADLI+YLK AT
Sbjct: 68 WEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 89.8 bits (213), Expect(2) = 3e-24
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = +1
Query: 100 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 279
P G+A G+KIF +CA CH V+ HK GPNL+G FGR++G A GFSY +K +
Sbjct: 8 PPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVI 67
Query: 280 WNDDTLFEYLENPKKY 327
W ++TL++YL PKK+
Sbjct: 68 WEENTLYDYLLTPKKH 83
Score = 39.5 bits (88), Expect(2) = 3e-24
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1
Query: 322 KYIPGTKMVFAGLKKANERADLIAYLKSAT 411
KY P KM F GLK+ +RADLIAYLK+AT
Sbjct: 117 KYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 218 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSL 334
+ L RLQDS TP P+K + L+ N+ P TS+
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSV 342
>08_02_0636 + 19567654-19568859
Length = 401
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +3
Query: 318 QEIHPWNQDGIC-WTQEGK 371
QE+ PW++DG+C W E K
Sbjct: 358 QEVFPWSRDGLCPWKYETK 376
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 169 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPG 336
AGG K G G G G+ S+ + KGI W +D +L +KY G
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKYGKG 293
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -2
Query: 197 FG-PTLCLPPASTVWHWA 147
FG PTLCLPP +T W A
Sbjct: 21 FGMPTLCLPPIATYWSHA 38
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 374 SFAFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLASEYEN 240
SF P N LVP Y+ G+ R K + ++P+ +++ N
Sbjct: 207 SFCLADPGNAFLVPSPYYPGWDRDIKWRTGIELIPVPCRSTDNFN 251
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 203 MDSLAEKLARLQDSHTP-MPIKLRALHGMTTLSLNILRIPRNTSLEPRWYLLD 358
+D +A+ A DSH+P +P+ L LHG + ++ +P S W L D
Sbjct: 818 VDGIADYCAL--DSHSPAVPLHLVELHGSLCMVRDLRHLPHGESCLEIWALRD 868
>10_08_0223 - 15986763-15987575
Length = 270
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 172 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 285
GG G +G +G +G AG Y ++ G TWN
Sbjct: 40 GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77
>03_04_0184 - 18210875-18212065
Length = 396
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 514 EYITDHTDWAK*EVDSRNVMENASYGIFYYFKITW*QI*DR 392
+ I +H WA E ++N N S G Y +K+ W + D+
Sbjct: 259 DLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299
>06_03_0752 - 24171847-24174321
Length = 824
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 311 RIPRNTSLEPRWYLLDSRR 367
R+P ++ L P+WY L+ RR
Sbjct: 158 RVPPDSPLAPQWYRLEERR 176
>05_04_0397 - 20937280-20937386,20937494-20939681
Length = 764
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 308 LRIPRNTSLEPRWYLLDSRR 367
+R+P ++ L P+WY L+++R
Sbjct: 162 IRVPPDSPLAPQWYRLENKR 181
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 115 ENGKKIFVQRCAQCHTVEAGGKHKVGPNLH 204
ENGK + RC CHTV G K LH
Sbjct: 150 ENGKPVKA-RCIHCHTVVKCGSEKGTSVLH 178
>01_05_0222 +
19462487-19462663,19462916-19462991,19463106-19463185,
19463293-19463342,19463436-19463520,19463640-19463738,
19464110-19464346
Length = 267
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 189 YFVFAT---SFNSVALGTSLYKNFLSIFSVSCRYTHFK 85
YF+FA SFN +A S Y LS+ S+ C HFK
Sbjct: 129 YFMFANATVSFNQIA---SSYPGPLSLVSILCPDPHFK 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,084
Number of Sequences: 37544
Number of extensions: 316956
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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