Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31815
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    20   9.7  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 350 SCHTASDIPGNLHTLPGLCLSLLG 279
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 225 QRRRARSCSHSKSSFPSTAKQRKTKTRER 311
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 129 SKS*IEKAKDALSTSFLLRSLILSERL 49
           SKS    ++D  +TS + +++ILS++L
Sbjct: 80  SKSRSPDSRDRSNTSNISKTVILSDKL 106


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -2

Query: 360 PFSFLSYSFRHSRKSSYAPWSLSF 289
           PF F   +  H  K  Y P S  F
Sbjct: 260 PFGFRKRTLPHFIKDDYGPESRGF 283


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  VFTGRRSDKMSDLSKNDVERASFAF 112
           VFT   S  + +LS+N +E   +AF
Sbjct: 544 VFTSIASLLLLNLSENHIEWFDYAF 568


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 129 SKS*IEKAKDALSTSFLLRSLILSERL 49
           SKS    ++D  STS   +++ILS +L
Sbjct: 80  SKSRSPDSRDRSSTSNTSKTVILSNKL 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,368
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)