Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31814
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   1.7  
UniRef50_Q6CK55 Cluster: Similarity; n=2; Kluyveromyces lactis|R...    33   2.9  
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F...    33   3.9  
UniRef50_UPI000023E2E7 Cluster: hypothetical protein FG09233.1; ...    33   5.1  
UniRef50_A0Q3Y9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q7XIS1 Cluster: Putative uncharacterized protein OJ1131...    33   5.1  
UniRef50_Q1DK80 Cluster: Predicted protein; n=1; Coccidioides im...    33   5.1  
UniRef50_Q9W1A3 Cluster: CG3260-PA; n=3; Sophophora|Rep: CG3260-...    32   8.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 331  QRLDSAPGIAEVHGRR 284
            QRL SAPGIAEVHGRR
Sbjct: 971  QRLGSAPGIAEVHGRR 986


>UniRef50_Q6CK55 Cluster: Similarity; n=2; Kluyveromyces lactis|Rep:
           Similarity - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 1336

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +3

Query: 12  VLYWKYVYLALREVYSYSELC---VVNE*LNQNKIMQELTSQVVAMKCRSPS 158
           V  ++  YLALR   S  + C   +VNE LN+ +++Q LTS+++  + +  S
Sbjct: 827 VTQFRKEYLALRASISKDDTCSSSLVNEDLNKTEVIQNLTSEIIQSEMKIAS 878


>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
           Filobasidiella neoformans|Rep: ATP-dependent RNA
           helicase DBP5 - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 546

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
 Frame = -1

Query: 456 LAGRGYAWRGLHGRVLSHEGYDLFSFY*RGFWRVFNFSNARRSGLTLPLALL------KS 295
           L   G+A   LHG  LS E   +   +  G  +V   +N    G+ +P   +        
Sbjct: 408 LISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPD 467

Query: 294 MGDGNHSPSSGSYARQYARTRKNKLSAYAAIYSHRY 187
           +G G + P   +Y  +  RT +      + I++H Y
Sbjct: 468 LGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDY 503


>UniRef50_UPI000023E2E7 Cluster: hypothetical protein FG09233.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG09233.1 - Gibberella zeae PH-1
          Length = 1576

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 288 DGNHSPSSGSYARQYARTRKNKLSAYAAIYSHRYSR---ISAEPLPARAI 148
           DG+  PSS ++AR   R+R+  L+   A  S   S    ++AEP+P  A+
Sbjct: 284 DGSALPSSANWARNPQRSRRGSLATSGAASSPAISSAQPVTAEPVPEEAV 333


>UniRef50_A0Q3Y9 Cluster: Putative uncharacterized protein; n=1;
           Francisella tularensis subsp. novicida U112|Rep:
           Putative uncharacterized protein - Francisella
           tularensis subsp. novicida (strain U112)
          Length = 510

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 369 GFWRVFNFSN-ARRSGLTLPLALLKSMGDGNHSPSSGSYARQYARTRKNKLS 217
           G W  F  S  A   GLT+P  LL++  D +++P++G Y + +     N LS
Sbjct: 240 GKWNKFRKSEQAAYIGLTVPQFLLRAPYDPDNNPTTGKYIKNFKEKILNPLS 291


>UniRef50_Q7XIS1 Cluster: Putative uncharacterized protein
           OJ1131_E05.136; n=2; cellular organisms|Rep: Putative
           uncharacterized protein OJ1131_E05.136 - Oryza sativa
           subsp. japonica (Rice)
          Length = 566

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -1

Query: 294 MGDGNHSPSS--GSYARQYARTRKNKLSAYAAIYSHRYSRI-SAEPLPARAICISLPPLG 124
           +G+  H P S   S A   AR R   LS  A ++ H  +R  SAEP+  RA  ++ PP G
Sbjct: 417 LGENPHRPFSFFSSSAAPRARCRDAPLSP-AVVWPHAAARYRSAEPVSCRARALAAPPRG 475


>UniRef50_Q1DK80 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 309

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 285 GNHSPSSGSYARQYARTRKNKLSAYAAIYSHRYSRISAEPLPA--RAICISLPP 130
           G+  P SGS+ R   ++ K   S YAA+     SR+   P+P+   A+ +++PP
Sbjct: 51  GDIMPKSGSHRRFSTQSDKLAASFYAALQKATASRLDLAPMPSYQLALPLAIPP 104


>UniRef50_Q9W1A3 Cluster: CG3260-PA; n=3; Sophophora|Rep: CG3260-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 347

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 120 TSQVVAMKCRSPSQAAARLISESIDDYISRHKRTVYFFLSLHTD 251
           TSQ+   KCR+P    A+L +   D+Y     R++Y FL  ++D
Sbjct: 41  TSQLQCSKCRAPKSFLAQLYAPFEDEY--NFHRSIYVFLCRNSD 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,510,979
Number of Sequences: 1657284
Number of extensions: 9072662
Number of successful extensions: 26375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26338
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)