Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31814
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   1.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 303 LKSMGDGNHSPSSGSYARQYARTRKNKLSA 214
           +K+ GDG      GS+ RQ A T+ N LS+
Sbjct: 254 IKNAGDGLRLLREGSHRRQVAATKCNDLSS 283


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 3   VPCVLYWKYVYLALREVYSYSELCVVNE*LNQNKIMQELTSQVVAMKCRSPSQAAARLIS 182
           V C LY+KY +L L +    S +  V+E   + K   +L +  +    R+  +   +L S
Sbjct: 667 VACHLYFKYKFLPLMDAVPISAIESVSE-RPEIKYPMDLGTSEMKNVGRAYPEILEKLSS 725

Query: 183 ES-IDDYISRHKRT 221
            S  D+++    RT
Sbjct: 726 SSGSDEFLETSSRT 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,032
Number of Sequences: 5004
Number of extensions: 36097
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)