Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31814
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
           protein C44E4.1a protein.
          Length = 2712

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/56 (19%), Positives = 32/56 (57%)
 Frame = +3

Query: 102 KIMQELTSQVVAMKCRSPSQAAARLISESIDDYISRHKRTVYFFLSLHTDEHTTHL 269
           ++M+    ++   +C+  +QA  +++   + +  +  ++ ++ FL++ TD+ T HL
Sbjct: 563 ELMRNEMKRMPLHRCQMMAQAIVKIVFGLLSNGTNEAEQLIHVFLNIFTDQDTYHL 618


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
           protein C44E4.1c protein.
          Length = 2710

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/56 (19%), Positives = 32/56 (57%)
 Frame = +3

Query: 102 KIMQELTSQVVAMKCRSPSQAAARLISESIDDYISRHKRTVYFFLSLHTDEHTTHL 269
           ++M+    ++   +C+  +QA  +++   + +  +  ++ ++ FL++ TD+ T HL
Sbjct: 563 ELMRNEMKRMPLHRCQMMAQAIVKIVFGLLSNGTNEAEQLIHVFLNIFTDQDTYHL 618


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 360 SRSLVNRRRTSHSPRVTVPARADPAKRTP 446
           +RS     RT+  PR T P +A PA + P
Sbjct: 339 TRSATPATRTAVPPRATAPPKAAPASKAP 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,509
Number of Sequences: 27780
Number of extensions: 205209
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)