Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31814
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   0.20 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   0.81 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   10.0 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   10.0 

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 150 ICISLPPLGMLILALSYFDLTIRSQHRVHYKNIL 49
           + I L  L +  + L +F++ I+ +H V   NIL
Sbjct: 250 VFIGLQSLSLTNIQLEHFEMKIKRKHNVFVNNIL 283


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = -1

Query: 300 KSMGDGNHSPSSGSYARQYARTRKNKLSAYAAIYSHRYSRISAEPLPARAICISLPPLGM 121
           K + + N   ++ +Y   Y     N  + Y  +  +    I   P+P    C + PP  M
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGNFPPRPM 139


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 21/94 (22%), Positives = 39/94 (41%)
 Frame = +3

Query: 3   VPCVLYWKYVYLALREVYSYSELCVVNE*LNQNKIMQELTSQVVAMKCRSPSQAAARLIS 182
           V C+  W YV   +  +  YS L  ++   N  K+++E      A K    S  + +   
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRL--LSSIRNHEKMLRE-----QAKKMNVKSLVSNQDKE 273

Query: 183 ESIDDYISRHKRTVYFFLSLHTDEHTTHLMVSGY 284
            S +  I++   T++F   L    + T  ++  Y
Sbjct: 274 RSAEVRIAKVAFTIFFLFLLAWTPYATVALIGVY 307


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 21/94 (22%), Positives = 39/94 (41%)
 Frame = +3

Query: 3   VPCVLYWKYVYLALREVYSYSELCVVNE*LNQNKIMQELTSQVVAMKCRSPSQAAARLIS 182
           V C+  W YV   +  +  YS L  ++   N  K+++E      A K    S  + +   
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRL--LSSIRNHEKMLRE-----QAKKMNVKSLVSNQDKE 273

Query: 183 ESIDDYISRHKRTVYFFLSLHTDEHTTHLMVSGY 284
            S +  I++   T++F   L    + T  ++  Y
Sbjct: 274 RSAEVRIAKVAFTIFFLFLLAWTPYATVALIGVY 307


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 153 AICISLPPL 127
           A CISLPPL
Sbjct: 169 AACISLPPL 177


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 258 TTHLMVSGYRRPWTSAMPGAESS 326
           +THL VSG  R  ++  P   +S
Sbjct: 387 STHLKVSGINRVGSTRRPSRRNS 409


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 177 SAEPLPARAICISLPPLGMLILAL 106
           S +P     I I +  LG+L+LAL
Sbjct: 127 STDPGLVAGIVIGVTSLGLLLLAL 150


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 177 SAEPLPARAICISLPPLGMLILAL 106
           S +P     I I +  LG+L+LAL
Sbjct: 98  STDPGLVAGIVIGVTSLGLLLLAL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,397
Number of Sequences: 438
Number of extensions: 2711
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)