Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31814
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24700.1 68415.m02951 transcriptional factor B3 family protei...    27   5.7  
At4g22120.1 68417.m03198 early-responsive to dehydration protein...    27   7.5  
At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR...    27   9.9  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    27   9.9  

>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 555

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 411 LSHEGYDLFSFY*RGFWRVFNFSNARRSGLTLPLALLKS 295
           L  E Y+   FY R  WR F  +N ++ G      L+K+
Sbjct: 197 LRREAYNYGRFYMRRGWRSFCIANGKKPGDVFAFKLVKN 235


>At4g22120.1 68417.m03198 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 771

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 90  LNQNKIMQELTSQVVAMKCRSPSQ--AAARLISESIDDYISRHKRTVYFFLSLHTDEHTT 263
           + + + +  +  Q VA + R P Q     R +    D+ +S  +   +FFL  H D + T
Sbjct: 178 MKEYETIANMRLQFVASEARRPDQFTVLVRNVPPDADESVS--ELVEHFFLVNHPDHYLT 235

Query: 264 HLMV 275
           H +V
Sbjct: 236 HQVV 239


>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 812

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 219 SAYAAIYSHRYSRISAEPLPARAICIS 139
           S +   +  RYS ++ EPLPA  +C++
Sbjct: 207 SHFVKDFHTRYSEMTLEPLPAHFLCMT 233


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 354 FNFSNARRSGLTLPLALLKSMG 289
           FN S+A RSG++  +A LKS+G
Sbjct: 525 FNLSDACRSGVSQAMAELKSLG 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,697
Number of Sequences: 28952
Number of extensions: 191428
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)