Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31813
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   4.1  
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.2  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 139 FLK*IKSPVFSSCSH*LCLSYITCIFAFLVV 47
           FL+ IKSP  +     LCLS I   F+F ++
Sbjct: 109 FLRTIKSPRMTGYITSLCLSAILKFFSFRII 139


>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 94

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 133 K*IKSPVFSSCSH*LCLSYITC 68
           K I SPV SS  H L +SY  C
Sbjct: 46  KVISSPVVSSPIHALSMSYFEC 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,938
Number of Sequences: 5004
Number of extensions: 15890
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)