Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31813
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 27   7.2  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.5  

>SB_57216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 82 SYITCIFAFLVVVNNKR 32
          S++TC+F FL+V+ N R
Sbjct: 6  SHLTCLFCFLLVLGNSR 22


>SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 200 EQYFRNDNNSTKKHVNNIDIVFEVD 126
           +  F N N STK  +NNIDI + ++
Sbjct: 8   DHLFINTNTSTKVDINNIDINYNMN 32


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 220 FFLILIKNNIFAMIIIARRNTSITLILFLK*IKSPVFS 107
           F L    NN   +I+I    T+ TL+L     K PVFS
Sbjct: 124 FRLAFHPNNSICLIVIFTSKTNFTLLLKRSKKKDPVFS 161


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 IIARRNTSITLILFLK*IKSPVFSSCSH*LCLSYI-TCIFAFLV 50
           I+A   T++T+++F+K   SPV  +CS  + +  + T    FL+
Sbjct: 586 ILAFLLTNLTILMFIKHRTSPVVRACSFEISIVLLCTIALGFLI 629


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,916,584
Number of Sequences: 59808
Number of extensions: 107714
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)