Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31813
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    26   8.2  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    26   8.2  

>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 104 GTKHRTLNLLQKQYQCY*RVSSCY 175
           G  +RTL +LQKQ+  Y R+++ Y
Sbjct: 648 GHSYRTLFMLQKQHASYRRIAANY 671


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 104 GTKHRTLNLLQKQYQCY*RVSSCY 175
           G  +RTL +LQKQ+  Y R+++ Y
Sbjct: 648 GHSYRTLFMLQKQHASYRRIAANY 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,129,954
Number of Sequences: 27780
Number of extensions: 90108
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)