Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31812
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)                     72   2e-13
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)                   27   6.9  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   27   6.9  
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)                 27   9.2  
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)                     27   9.2  

>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
          Length = 384

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 39/102 (38%), Positives = 60/102 (58%)
 Frame = +1

Query: 211 DDIFVPILNMVRQDFALKTEVMYIFKKLGITEGDLIFRNDYDLCSLLRDSKCNVVLVDHH 390
           + IF+P+LN+ R DF L+TE+ Y F + GI   DL+F +++D+ +L    +  V LVDH+
Sbjct: 4   EKIFLPVLNIPRADFPLRTEITYTFARFGINLKDLVFTDEFDMTALKTKGELAVTLVDHN 63

Query: 391 VLAANDVFLSPFVSEIIDHRPLDKSRWTYKGDTRLTIEIVGS 516
           +LA +   L   + E+IDH   + +    K     TIE VGS
Sbjct: 64  LLARHQQGLISVLVEVIDHHKDELAPHVKK-----TIEPVGS 100


>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 316  IFRNDYDLCSLLRDSKCNVVLVDHHVLAANDVFL 417
            + RN  DL +LLR  KC V LV +  L   D+FL
Sbjct: 1183 LLRNCEDLVNLLR--KCQVRLVQNDELLPTDIFL 1214


>SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +1

Query: 1   KLQTMNEFLNNIVNKLKSNNYDNINIVIGNESCDLDSAVCS-----IVYALYLNWQHNQI 165
           KL+  N+ LN+ + +   +   +     G E+ DLD    +      V A  L+WQH Q 
Sbjct: 46  KLENWNDSLNSRMREFLEDMQKSRQSQTG-EANDLDEPQFTKEDVLTVVAFILSWQHRQ- 103

Query: 166 KCKVCTKDKRGASSKDDIFVPILNMVRQDFA 258
            C+   +D+   S  +D F  +L+   ++ +
Sbjct: 104 -CRCVFRDQLNLSRLEDQFQILLSCAIEEIS 133


>SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)
          Length = 313

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 238 CLI-SGRKYRLWTKHHVCLSCIPC 170
           C+I   RKY L   H VCLS  PC
Sbjct: 76  CVIRDSRKYVLPLSHDVCLSLTPC 99


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 304 EGDLIFRNDYDLCSLLRD 357
           E DLIF NDY++  L RD
Sbjct: 279 EQDLIFHNDYEIVRLARD 296


>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
          Length = 234

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 4   LQTMNEFLNNIVNKLKSNNYDNINIVIGNESCDLDSAVCSIVYALYLNW 150
           ++T    + + V K+K     +INI I N  C   + + ++ Y  +LNW
Sbjct: 177 IETFTITIIDTVGKIKPTTLPDINIYITNAECYRFTMLGTLAY--FLNW 223


>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 458

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 43  KLKSNNYDNINIVIGNESCDLDSAVCSIVYALYLNWQHNQIKCKVCTK 186
           KLK   ++  N        + DSA   +++A+ ++W  +Q  C V T+
Sbjct: 106 KLKEAEFEFYNNTFEGYLANRDSAKAHLIHAVSISWIWSQHWCTVTTR 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,495
Number of Sequences: 59808
Number of extensions: 299797
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)