Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31810
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49290.1 68418.m06100 leucine-rich repeat family protein cont...    32   0.20 
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont...    29   1.9  
At5g57210.1 68418.m07147 microtubule-associated protein-related ...    27   7.5  
At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein st...    27   9.9  

>At5g49290.1 68418.m06100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 888

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 228 LSASNPDLETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLVSD 91
           L  +NP+LE +   N  F+IF +    H+L  + F+ +++ GL  D
Sbjct: 342 LLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPD 387


>At1g74180.1 68414.m08591 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 951

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 228 LSASNPDLETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLVSD 91
           L  +NP+L+ +   N  F+IF +    H L  + F+ + + G++ D
Sbjct: 377 LLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPD 422


>At5g57210.1 68418.m07147 microtubule-associated protein-related
           contains some similarity to microtubule-associated
           protein GI:5032258 from [Arabidopsis thaliana]; contains
           Pfam profile PF00566: TBC domain
          Length = 737

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 258 LIYLR*MIVELSASNPDLETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLV-SDPRK 82
           ++YLR  ++    +   L+ +LNF     +  V++K  +L  +    ++   L+   PRK
Sbjct: 410 ILYLRSSLLATENATSSLKKLLNFPEDIDLSKVIEKAKTLQSLALEINARRDLIPKGPRK 469

Query: 81  TLPTDSVPFNVFTL 40
            +   S+  +  +L
Sbjct: 470 PMRGHSLSVDSISL 483


>At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein
           strong similarity to unknown protein (emb|CAB83315.1);
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 342 ATKHVFPHGKYKTCI*YVINYVKLK*NPLIYLR*MIVELSASNPDLE 202
           ATK     G       YVINYVK   +    LR +  E  + +PD E
Sbjct: 455 ATKTAVMDGTVHPLTSYVINYVKFLFDYQTTLRLLFQEFDSKDPDSE 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,804,532
Number of Sequences: 28952
Number of extensions: 185139
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)