BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31805 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 27 1.7 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 2.2 SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 2.9 SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 6.7 SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 8.9 SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 25 8.9 >SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 189 Score = 27.1 bits (57), Expect = 1.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 392 FFLRIQSINLSFVYFSIQI*ELVVYHHH 309 +FLR++SI+ F F I I E +VY ++ Sbjct: 77 YFLRLESIDYEFSEFHIIINESIVYPYY 104 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 26.6 bits (56), Expect = 2.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 399 GVSAKVTDLMQSTLLSSCFS*KYGIMQVDLF 491 GVS + S +LS CF KY ++ VD F Sbjct: 255 GVSLQSFQFRSSQILSLCFRPKYKMLLVDTF 285 >SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1238 Score = 26.2 bits (55), Expect = 2.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +3 Query: 333 LNLDRKVNE*EINRLNSKKEFDGVSAKVTDLMQSTLLSSCF 455 L+L+ K+ + E+N+ KK+F G + D +L+SS F Sbjct: 387 LSLELKLMQNELNKGQLKKQFKGDLRNLADWNNLSLVSSKF 427 >SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1316 Score = 25.0 bits (52), Expect = 6.7 Identities = 7/26 (26%), Positives = 17/26 (65%) Frame = -3 Query: 370 LISHSFTFRSKFKNL*FTIIIEVCIM 293 ++++S T + FK+L F + +C++ Sbjct: 53 IVTYSLTIQFNFKSLLFLFFVSICVV 78 >SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces pombe|chr 3|||Manual Length = 581 Score = 24.6 bits (51), Expect = 8.9 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -3 Query: 400 PSNSFFEFNLLISHSFT 350 PSN+ FEFN+ +S ++T Sbjct: 438 PSNTAFEFNVTLSINYT 454 >SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 24.6 bits (51), Expect = 8.9 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -1 Query: 501 IKTKISQPALFHIFKKN 451 + K + PALFH+FK+N Sbjct: 13 LANKKTFPALFHLFKRN 29 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,582,480 Number of Sequences: 5004 Number of extensions: 25057 Number of successful extensions: 58 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 58 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -