Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31805
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   5.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   5.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   5.7  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +3

Query: 300 HTSMMMVNYKFLNLDRKVNE*EINRLNSKKEFDGVSAKVTDLMQSTLLSSC 452
           +   M+    F+N D   NE +     +K + + V+  V +    T  +SC
Sbjct: 62  YVDCMLKKVGFVNADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITESNSC 112


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 264 SIPVPGAGDDI 296
           S+P+PGA DD+
Sbjct: 477 SLPLPGADDDL 487


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 269 NRTRYFPQVTSYAPKLTRNEKKKTSQSTN 183
           NR  Y PQ     P+L R  K +     N
Sbjct: 240 NRPVYIPQPRPPHPRLRREAKPEAKPGNN 268


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 269 NRTRYFPQVTSYAPKLTRNEKKKTSQSTN 183
           NR  Y PQ     P+L R  + K     N
Sbjct: 45  NRPIYIPQPRPPHPRLRREAEPKAEPGNN 73


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 269 NRTRYFPQVTSYAPKLTRNEKKKTSQSTN 183
           NR  Y PQ     P+L R  K +     N
Sbjct: 128 NRPVYIPQPRPPHPRLRREAKPEAEPGNN 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,349
Number of Sequences: 438
Number of extensions: 1591
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)