Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31803
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        29   2.3  
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)                  27   6.9  

>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 293 TEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSL 189
           T+Y  DP +I   R++Q L N +Q S  P++DY++
Sbjct: 200 TQY--DPYNIRL-RITQVLENRKQNSSEPVLDYAI 231


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 294 YRVFIGSCRYNISAAFSNSSQFGT 223
           YR+FI   R+NI+A F  S  +GT
Sbjct: 843 YRLFIDEQRFNIAANFHGSQPYGT 866


>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 139 LYTHGAHTNYRLDIRLNYNQGILIMY 62
           LY HGA T Y    R+ Y+ G  I+Y
Sbjct: 37  LYDHGARTLYDHSTRILYDHGTRILY 62


>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
          Length = 415

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 230 NWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKI 400
           N+E  ++ +E +++  P  TRY  + S +  A++ K+   +K  Q    + Q +  +
Sbjct: 299 NFEITKEMSEKIFVIPPSRTRYLSEISENNRAYDKKVDAQEKVAQKLYGIYQTILSV 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,909
Number of Sequences: 59808
Number of extensions: 263066
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)