Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31798
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    68   7e-13
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   1.7  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   6.7  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   8.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.9  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 40/149 (26%), Positives = 72/149 (48%)
 Frame = +2

Query: 62  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 241
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I         
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 242 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 421
                  I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 422 ALFQLMEPTVTIRVRQTDKALVESLLGKA 508
           A+  L EP   +  RQ D  +V++ + KA
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKA 151


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 320 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 445
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 61  RHGCCLFLTPLTRKTADIE 5
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 278 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 385
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 275 SKIGSSSEVQPASPSFHSI 219
           S +G+SS+ +   P FHS+
Sbjct: 164 SSVGNSSDFREVEPGFHSV 182


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 469 LTDADGDSGFHELEESLHNKCDQQL*VQFGV 377
           + D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 507 ILDSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,123
Number of Sequences: 5004
Number of extensions: 29907
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)