Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31795
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   1.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.5  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 408 YILLFPLITLICV 446
           YILLF L+T+ CV
Sbjct: 4   YILLFVLVTITCV 16


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 408 YILLFPLITLICV 446
           YILLF L+T+ CV
Sbjct: 4   YILLFVLVTITCV 16


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 YFLNILYITYFYSRLL 432
           Y + +++I  FYSRLL
Sbjct: 229 YVIPLIFIILFYSRLL 244


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 YFLNILYITYFYSRLL 432
           Y + +++I  FYSRLL
Sbjct: 229 YVIPLIFIILFYSRLL 244


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 YKYMIDSNYDIFLHNNIS*LYSAXYFLNI 399
           YKY  ++ Y+   +N    LY   Y +NI
Sbjct: 96  YKYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 313 YKYMIDSNYDIFLHNNIS*LYSAXYFLNIL 402
           YKY   +NY+ + +NN +      Y+ N +
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 251 LIRDHSSMKSESLTIDNYNDITTPII 174
           +IR H   K++S TID Y+ I  PI+
Sbjct: 351 MIRVH---KTQSQTIDIYSRIGFPIL 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,087
Number of Sequences: 438
Number of extensions: 2321
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)