Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31794
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    29   0.55 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   1.3  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   2.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   5.1  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    25   5.1  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    25   5.1  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   5.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.1  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    25   5.1  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.9  

>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = +3

Query: 168 TLEQQFNSLTKSKDAQD---FSKXWKDGXESVLQQLNAXAKSLQGALGDXNGKXKEALEQ 338
           T+E  ++SL KSK +     F +  ++  + +L   N   + L   + +   K +++LEQ
Sbjct: 8   TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65

Query: 339 SRQNIERTAEELRKGHPD---VEKNATALREKLQAAVQNTVQESHKL 470
           +    +   E L K H +    E+   + +EKL A ++   + S +L
Sbjct: 66  TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = +3

Query: 162 IRTLEQQFNSLTKSKDAQDFSKXWKDGXESVLQQLNAXAKSLQGA------LGDXNGKXK 323
           I T++ +  SL K  D     +  ++  ES L  L      L  A      L D   K K
Sbjct: 352 IMTIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAK 409

Query: 324 EALEQSRQNIERTAEE 371
             LEQ+R  +ERT  E
Sbjct: 410 TELEQARIELERTQRE 425


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 213 QDFSKXWKDGXESVLQQLNAXAKSLQGALGD-XNGKXKEALEQSR-QNIERTAE 368
           +D +  + +   SVLQ+L+   + +QG LG   N     AL Q + QN++   E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 282 SLQGALGDXNGKXKEALEQSRQNIE-----RTAEELRKGHPDVEKNATALREKLQAA 437
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  GSDGATRRSRLLQGHRTPHQGSSIRTLEQQFNSLTKSKDAQ 215
           GS+G ++++R++Q    P     +RT     N+LTKS   Q
Sbjct: 68  GSEGVSKKTRIIQVAYHPSNNELVRT-----NTLTKSAIVQ 103


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  GSDGATRRSRLLQGHRTPHQGSSIRTLEQQFNSLTKSKDAQ 215
           GS+G ++++R++Q    P     +RT     N+LTKS   Q
Sbjct: 68  GSEGVSKKTRIIQVAYHPSNNELVRT-----NTLTKSAIVQ 103


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 315 KXKEALEQSRQNIERTAEELRKGHPDVEKNATALREKLQAAVQ 443
           K ++ LE S Q +E    E + G P+V++     +EK ++ V+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVK 173


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 402 NATALREKLQAAVQNTVQESHKLXXKVXSNVQETNEKL 515
           N ++LRE L   VQ  V+E H     +  NV+ET  ++
Sbjct: 751 NVSSLREDL--GVQINVEEGHIRIQGIKKNVEETAARI 786


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
 Frame = +3

Query: 99  DGATRRSRLLQG---HRTPHQGSSIRTLEQQFNSLTKSKDAQDFSKXWKDGXESVLQQLN 269
           D AT RS L      +R      S + ++   NS  K+ +A  F     +G +  ++ + 
Sbjct: 56  DFATYRSVLANKEIVNRIESSMKSFKPVKIDLNSQLKAINA--FEAKASEGAKKNVELVK 113

Query: 270 AXAKSLQGALGDXNGKXKEALEQSRQNIERTAEELRKGHPDVEK 401
           A  ++L   L +        +EQ+R   E T E++++  P++EK
Sbjct: 114 AELQNLSATLKN--------IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 47  GRQVRSSLRLHRSGPRERWCDATLPTSSRASNTTPREFHKDFRTTV*LAH 196
           G  V    RLH   P++R C   +P   R    T R F     + + ++H
Sbjct: 28  GSLVTYDSRLHLPQPKDRQCSTLVPLYRRLLKAT-RRFWDPMASQILISH 76


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 234 KDGXESVLQQLNAXAKSLQGALGDXNGKXKEALEQSRQNIERTAEE 371
           KDG ++   +LN  AK L  +    + +  +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -3

Query: 106 APSLPWARAMQAKRTTN----LAAMMYCRE 29
           +PS PWA  + +K   N     AA+  CRE
Sbjct: 92  SPSCPWAYILSSKNNPNQNPQAAALTKCRE 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,377
Number of Sequences: 5004
Number of extensions: 24277
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)