Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31792
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.42
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 2.2
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 2.9
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 2.9
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 2.9
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 27 6.8
11_06_0254 - 21721667-21721718,21722025-21722647 27 8.9
09_02_0247 + 6222463-6222628,6223121-6223134 27 8.9
08_01_0893 - 8789491-8791416 27 8.9
07_03_1107 - 24024387-24024497,24025799-24026410 27 8.9
05_02_0122 - 6840840-6841307 27 8.9
02_05_1039 + 33707196-33708815 27 8.9
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 27 8.9
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 27 8.9
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 324 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 175
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 114 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 287
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 105 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 284
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 285 D 287
D
Sbjct: 90 D 90
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 280
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 180 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 88
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 154 PQSPARRSFSGLPGPLGQGEHADSFSVARVRP 59
PQ P F GLP +G +H D ++A P
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHP 308
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 327 FPTTPTAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDS 196
F + PT+ +P R+ ++ +H + S+DG+ + RAG +D+
Sbjct: 144 FASVPTSTQPNRMFVHSATSHGLVSNDGKQL-RAGLPQRTIFDA 186
>09_02_0247 + 6222463-6222628,6223121-6223134
Length = 59
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 280 LRTDTRWLHGRRRCWE 327
L+ RWL+ RRCW+
Sbjct: 34 LKESPRWLYSSRRCWD 49
>08_01_0893 - 8789491-8791416
Length = 641
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 133 SFSGLPGPLGQGEHADSFSVARVRPRTXKGITDLLLLNXRAGR 5
+F G P G G A F + K IT L LL AG+
Sbjct: 340 AFEGFNAPFGGGLDASEFVTTTKKDHKDKSITGLELLATSAGQ 382
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 157 KPQSPARRSFSGLPGPLGQGEHADS 83
K ++PA S + PGP G G ADS
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADS 203
>05_02_0122 - 6840840-6841307
Length = 155
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 261 IGSSDGRCVQRAGT*STRAYDSRLLGIPRLWG 166
+G+ G C + ++R Y S L+G+PR G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140
>02_05_1039 + 33707196-33708815
Length = 539
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 363 TFTSSK*SSLVXFPTTPTAVKPPR 292
T T+S SSL+ P +P+A PPR
Sbjct: 7 TTTTSPFSSLLLLPISPSAATPPR 30
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 154 PQSPARRSFSGLPGPLGQGEHADSFS 77
P++P R S SG P P G A SF+
Sbjct: 20 PETPGRGSSSGSPAPGGSASKAVSFA 45
>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 230 LCT-HRPSLLPIE*FSEVFGPTRGGFTA-VGVVGKXTK--LDHLEEVKVVTRFP*G 385
+CT H+PS+ E F E+F RGG VG VG+ + +++ E + V+R G
Sbjct: 1050 VCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDG 1105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,077
Number of Sequences: 37544
Number of extensions: 296906
Number of successful extensions: 658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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