Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31790
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    24   7.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   7.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    24   9.8  

>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 WGSDSYGDEESDNEE 64
           WG +   +EESDNE+
Sbjct: 236 WGDERSDEEESDNEQ 250


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 165 VEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGV 302
           V+   TGY     +KA E   ++  GT   A+    +FAY G DG+
Sbjct: 835 VKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAY-GEDGL 879


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 297 GVTYAVTYVANEGGFQPSXPHIPKA*VNRT 386
           G  +A    +NE  F P  PH+PK    +T
Sbjct: 208 GGHFAAMIASNE--FNPRDPHVPKVLAQKT 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,553
Number of Sequences: 5004
Number of extensions: 19367
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)