Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31790
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973... 29 1.0
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 29 1.8
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 28 2.4
02_03_0101 + 15233783-15234601 28 3.1
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 27 5.5
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 27 7.2
09_04_0157 - 15195001-15195178,15195298-15195473 26 9.6
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 26 9.6
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 9.6
>06_03_0593 +
22596372-22596384,22596856-22597037,22597119-22597344,
22597429-22597855,22598075-22598429,22598511-22599089
Length = 593
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 180 CCILRHQCCRCTCTDDDSVGNRADWGSDSYGDEESDN 70
CCIL + + DD V +DW SDS DEESD+
Sbjct: 226 CCILHNWILQFGM--DDHVPLESDWNSDS-DDEESDD 259
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.7 bits (61), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 195 RFHSRCCILRHQCCRCTCTDDDSVG 121
+F S+C +C C+C D++ +G
Sbjct: 322 KFKSKCKYSGDKCANCSCNDEEDIG 346
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 180 CCILRHQCCRCTCTDDDSVGNRADWGSDSYGDEESDNEE 64
CCIL + + DD V +DW SDS +E D +E
Sbjct: 321 CCILHNWILQFGM--DDHVPLESDWNSDSDDEEPDDLDE 357
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 192 FHSRCCILRHQCCRCTC 142
FHS C CCRCTC
Sbjct: 118 FHSTACGRFFICCRCTC 134
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 141 TDDDSVGNRADWGSDSYGDEESDNEE 64
TDDD+V + + GDEESD E+
Sbjct: 502 TDDDAVDPHLERIKNQAGDEESDEED 527
>07_03_0631 +
20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 335 TLVSDVGHSVSNTVRADVRKFSANLKSFVFSANVLQLTGFLSLDSVGGFIAG 180
T S+V H++ + + K ++ S + + LT SL+S+G IAG
Sbjct: 293 TTRSEVTHAIPGGIVITLDKIPTSVLSMILKHHAFGLTRKDSLESIGDKIAG 344
>09_04_0157 - 15195001-15195178,15195298-15195473
Length = 117
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 156 CRCTCTDD-DSVGNRADWGSD 97
C C C+ + +G++ADWG D
Sbjct: 49 CLCHCSSRFERMGDKADWGDD 69
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 132 DSVGNRADWGSDSYGDEESDNEE 64
+S+GN + W +D++G + D+EE
Sbjct: 403 NSIGNWSRWLTDNFGIDADDSEE 425
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 392 GACSVDLSLGNVRXRRLESTLVSDVGHSVSNTVRADVRKFS 270
G C D N+R R LE LV G + + RAD+RK++
Sbjct: 796 GKCYED---NNLRQRWLEVFLVKRFGWTWKDEYRADLRKYA 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.124 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,845
Number of Sequences: 37544
Number of extensions: 136251
Number of successful extensions: 343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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