Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31790
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23170.1 68414.m02895 expressed protein Location of ESTs gb|A...    28   2.6  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    27   3.4  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    27   4.5  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   6.0  
At2g11910.2 68415.m01278 expressed protein                             27   6.0  
At2g11910.1 68415.m01277 expressed protein                             27   6.0  
At1g69060.1 68414.m07902 expressed protein                             27   6.0  
At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3 ...    26   7.9  
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00...    26   7.9  

>At1g23170.1 68414.m02895 expressed protein Location of ESTs
           gb|AA395014, gb|T23026, gb|N65311 and gb|N37226;
           expression supported by MPSS
          Length = 569

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 141 TDDDSVGNRADWGSDSYGDEESDNEE 64
           T D S G R+ W S+ YGDE  D ++
Sbjct: 92  TADVSDGGRSKWRSNGYGDEGYDFDD 117


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 168 RHQCCRCT--CTDDDSVGNRADWGSDSYGDEESDNEER 61
           RH  C  T  C     VGN++   SDS  DEE + E++
Sbjct: 380 RHGSCSVTPFCISRKDVGNKSSSSSDS-EDEEEEKEQK 416


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 304 VTPSGPMYANSPRTSRASFSVPMFFS*PVS*ALIPLEVS*PVLYPSTPMLS 152
           +TPS P  ++SP   R S       S PVS +  P   S P +  S+P+++
Sbjct: 151 ITPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVA 201


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 285 IGPDGVTYAVTYVANEGGFQPSXPHIPKA 371
           +G  G +   ++VA   GF+PS P  P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


>At2g11910.2 68415.m01278 expressed protein
          Length = 168

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 138 DDDSVGNRADWGSDSYGDEESDNEE 64
           DDD  G+  D   D+  +EE D+EE
Sbjct: 130 DDDEEGDNDDEDEDNEDEEEDDDEE 154


>At2g11910.1 68415.m01277 expressed protein
          Length = 168

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 138 DDDSVGNRADWGSDSYGDEESDNEE 64
           DDD  G+  D   D+  +EE D+EE
Sbjct: 130 DDDEEGDNDDEDEDNEDEEEDDDEE 154


>At1g69060.1 68414.m07902 expressed protein
          Length = 630

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 183 RCCILRHQCCRCTCTDDDSVGNRADWGSDSYGD-EESD 73
           +C   R   C+ T +   S G R   GSD+Y D  ESD
Sbjct: 117 KCATFRFSKCKQTFSTMPSHGIRFGLGSDTYSDFSESD 154


>At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3
           WD-40 repeats (PF00400); similarity to WD-repeat protein
           8 (WDR8)(SP:Q9P2S5] [HOMO SAPIENS]
          Length = 458

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -2

Query: 243 CQCSSVDRFPEP*FRWRFHSRCCILRHQCCRCTCTDDDSVGNRADWGSD 97
           C C+ +  F     +W     C +L+ +   C C    S+   +D+ SD
Sbjct: 410 CVCNPLPGFSISDLKWNIDGSCLLLKDKDAFC-CATVPSLPESSDYSSD 457


>At1g10890.1 68414.m01251 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 592

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 299 TVRADVRKFSANLKSFVFSANVLQLTGFLSLDS 201
           TVR+  +K++A  K + F     Q  GF+ +DS
Sbjct: 259 TVRSVCKKWNALSKKWFFFGKAKQFLGFMMMDS 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,653,627
Number of Sequences: 28952
Number of extensions: 108243
Number of successful extensions: 281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)