Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31787
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    33   0.14 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    33   0.14 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   0.77 
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   0.77 
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   4.1  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   5.4  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   5.4  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical...    27   9.4  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    27   9.4  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +2

Query: 92  KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 271
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 272 FSVFYDKMRDEAIALFHLFYYAKD 343
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +2

Query: 92  KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 271
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 272 FSVFYDKMRDEAIALFHLFYYAKD 343
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 260 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQGQFLXA 412
           KN+      D+M DEAI LF        FE +YK     R+ L +   + A
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSASVDA 505


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 260 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQGQFLXA 412
           KN+      D+M DEAI LF        FE +YK     R+ L +   + A
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSASVDA 542


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 110 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 229
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 59   KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 154
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 59   KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 154
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 59   KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 154
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 68  NVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 247
           N+  + ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +T
Sbjct: 332 NLIPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKT 390

Query: 248 GFMPKNL 268
           G + +N+
Sbjct: 391 GTLTRNV 397


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 68  NVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 247
           N+  + ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +T
Sbjct: 332 NLIPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKT 390

Query: 248 GFMPKNL 268
           G + +N+
Sbjct: 391 GTLTRNV 397


>AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical
           protein F36H12.2 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 176 DIEMNMDNYTNKKAVEE---FLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDF 346
           D+E  MD+  +K+AV++   F ++Y +  MPK  E+   + ++      LF   +Y ++ 
Sbjct: 55  DVEFEMDHLEDKEAVQKTKTFDELYESQ-MPKYFEYQSNFSEVNGIWTLLFDQNHY-ENM 112

Query: 347 ETF 355
            TF
Sbjct: 113 STF 115


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 68  NVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 247
           N+  + ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +T
Sbjct: 8   NLIPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKT 66

Query: 248 GFMPKNL 268
           G + +N+
Sbjct: 67  GTLTRNV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,854
Number of Sequences: 27780
Number of extensions: 202493
Number of successful extensions: 599
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)