Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31786
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 159 2e-40
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 2.2
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 2.9
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 26 2.9
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 3.8
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 5.1
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 6.7
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 25 6.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.9
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 8.9
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 8.9
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 8.9
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 159 bits (387), Expect = 2e-40
Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Frame = +2
Query: 44 KALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKRLILARL 223
K + LREI+ E+ YC + +EF I+S ++ NWI +E P + + DQK +I RL
Sbjct: 192 KTMTLREIVETCEKIYCGSFAVEFTHISSRKRSNWILSHLETPTPFRYSHDQKIMIFDRL 251
Query: 224 TRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVL 403
+ + FE FL K+ ++KRFGLEGCE ++P MK +ID S G+ +I++GM HRGRLN+L
Sbjct: 252 SWADSFERFLFTKFPNDKRFGLEGCEAMVPGMKALIDRSVDEGISNIVIGMAHRGRLNLL 311
Query: 404 ANVCRKPLHQLFTQFAGL-EAEDDGSGDVKYHLG 502
N+ RKP +F++F G + +D+GSGDVKYHLG
Sbjct: 312 HNIVRKPAQAIFSEFRGTQDPDDEGSGDVKYHLG 345
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 280 FRFGRVRNFDSGDEASHRRFHETRSRIHHYGHAP*RAPQR 399
F +G V +S D + RR E +HH+G AP P+R
Sbjct: 836 FGYGTVYKGESFDLSQKRRRGEPV--VHHFGFAPGSTPRR 873
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 393 STYSRTCAVSLCTSCSHSSPVSKLR 467
S+++ C ++ T+C++S+P LR
Sbjct: 608 SSFAEACIQAIATNCNYSTPAELLR 632
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = -1
Query: 249 KFSNPVDLVRRARMSLFWSAFIFVTFGGSMRCRIQLHCSREFMNMNSIPMLLQY 88
KF PV ++ W + G R R+Q C+ + N+ +L+Y
Sbjct: 266 KFPRPVGMLLATAAE--WVCYFLKKEPGFTRFRVQFSCANRYFNIQKAEDVLKY 317
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 444 CVNSWCRGLRHTFASTLRRPLWGMPIMMDSTPSFVETSMTCFIAGIKISHP 292
C +S+ + + F+ R +W + DS S +S CFIA I+ +P
Sbjct: 115 CASSYTKLIN--FSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNP 163
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 113 FMFINSLEQCNWIRQRMEPPNVTKMNADQKRLIL 214
FM ++ L+QCN I ++P N M ++KR IL
Sbjct: 271 FMALDLLKQCNVIHSDIKPDN---MLVNEKRNIL 301
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 80 EQAYCNNIGIEFMFINSLEQCNW 148
E A CNN G F + C W
Sbjct: 29 ESAQCNNCGGPFTWFRRRHHCRW 51
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 KKWSSEKRFG-LEGCEILIPAMKQVIDVSTKLGVESI 364
++W+ ++R +EG A+K ++ V KLGV+ +
Sbjct: 46 RRWARQRRMETIEGHSSGFEALKSLLKVCLKLGVKEV 82
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 128 SLEQCNWIRQRMEPPNVTKMNAD---QKRLILARL 223
S+E C +R +EP TKM D KRL + R+
Sbjct: 4445 SIELCEQLRLILEPTLATKMQGDFRTGKRLNMKRI 4479
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 225 VRRARMSLFWSAFIFVTFGGSMRCRIQLHCSREFMNMNSIPMLL 94
+R + +S+ W+ VT + R L C E MNS+ L+
Sbjct: 1 MRESNVSIVWNNKASVTINTVLYDRRALDCDSEMSLMNSLSHLV 44
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 157 LSDPVALFQGIYEHELNTDVVAVRLLQTIQNFSQRERF 44
++ PV + IY+H N + V + N+ Q E+F
Sbjct: 192 VAKPVPIDVNIYDHGNNNEFVGRTYIHPSYNYGQFEQF 229
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 412 HVREYVEAPSMGHAHNDGFDSEFRGNV---DDLLHRRNQNFAPF 290
H+ E + P +D +D+EF+G + DD+L +++++F F
Sbjct: 311 HMPESPKTPIAESPDHDNWDNEFQGTLKISDDVL-KKSEHFMDF 353
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -3
Query: 205 PLLVSVHLCYV--RWLHALSDPVALFQGI---YEHELNTDVVAVRLLQTIQNFSQRERFF 41
P+ + C V +L ++ + F+G+ Y+ L+++ +A+ NFSQ +F
Sbjct: 163 PITYDLSFCTVFHGYLTSILEAYEFFRGVFKKYKAPLSSNFIAIGKTTDESNFSQLHHYF 222
Query: 40 FFADKR 23
D+R
Sbjct: 223 QKFDER 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,538
Number of Sequences: 5004
Number of extensions: 47035
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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