Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31786
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 190 6e-49
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 189 1e-48
02_02_0378 + 9561775-9562947 29 2.2
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 3.9
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 28 3.9
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 27 6.8
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 27 6.8
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 27 6.8
08_02_0848 - 21835146-21835217,21835712-21835759,21835846-218359... 27 8.9
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 190 bits (463), Expect = 6e-49
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Frame = +2
Query: 26 FIGEKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKR 205
F+ + L LREIL++LEQAYC IG E+M I ++CNW+R ++E + + N D++
Sbjct: 165 FLSDNRPVLTLREILSKLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRL 224
Query: 206 LILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHR 385
++L RL ST FENFLA KW++ KRFGLEG E LIP MK++ D + LGVE+I++GMPHR
Sbjct: 225 VMLDRLIWSTQFENFLATKWATAKRFGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHR 284
Query: 386 GRLNVLANVCRKPLHQLFTQFAG----LEAED---DGSGDVKYHLGT 505
GRLNVL NV RKPL Q+F++F G +E ED G+GDVKYHLGT
Sbjct: 285 GRLNVLGNVVRKPLSQIFSEFTGGTRPVEGEDGLYTGTGDVKYHLGT 331
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 189 bits (461), Expect = 1e-48
Identities = 91/167 (54%), Positives = 119/167 (71%), Gaps = 7/167 (4%)
Frame = +2
Query: 26 FIGEKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNVTKMNADQKR 205
F+ E LR +L RLEQAYC IG E+M I E+CNW+R R+E N + + D+++
Sbjct: 172 FLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQ 231
Query: 206 LILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVESIIMGMPHR 385
++L RL ST FE+FLA+KW++ KRFGLEG E LIP MK++ D + LGVESI++GMPHR
Sbjct: 232 VMLDRLMWSTQFESFLAQKWTTAKRFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHR 291
Query: 386 GRLNVLANVCRKPLHQLFTQFAG--LEAED-----DGSGDVKYHLGT 505
GRLNVL NV RKPL Q+F++F+G AE+ G+GDVKYHLGT
Sbjct: 292 GRLNVLGNVVRKPLRQIFSEFSGGTKPAEEGEGLYTGTGDVKYHLGT 338
>02_02_0378 + 9561775-9562947
Length = 390
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +3
Query: 228 DQLGSRISSLRNGPPRSVSVWKGAXXXXXXXXXXXTFPRNSESNPSLWACPIEGASTY-- 401
DQL + + G P S SVW+ +PR+ + + + G S Y
Sbjct: 279 DQLDAAVDGAGGGDPPSPSVWEKMDGATGDHVLFLGYPRSFAVEAARYGGEVPGGSAYFV 338
Query: 402 --SRTCAVSLCT 431
S+ C V C+
Sbjct: 339 GRSKPCRVYRCS 350
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 454 TGELCEQLVQRLTAHVREYVEAPSMGHAHN---DGFDS 350
TGELC L + L AH++E PS D +DS
Sbjct: 380 TGELCANLCRNLGAHLKEQDGHPSFSELRKVLLDNYDS 417
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 255 ARKFSNPVDLVRRARMSLFWSAFIFVTFGGSMRCRIQLHCSREFMN--MNSIPMLLQY 88
++ FS+P++ ++ + WS FIF I L ++N + P LL+Y
Sbjct: 172 SKNFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLFFQERYLNAIQTNAPHLLRY 229
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 255 ARKFSNPVDLVRRARMSLFWSAFIFVTFGGSMRCRIQLHCSREFMN--MNSIPMLLQY 88
++ FS+P++ ++ + WS FIF I L ++N + P LL+Y
Sbjct: 196 SKNFSSPLNQLQNRIWLMHWSIFIFFNHENGRNGIIDLFFQDRYLNAIQTNAPHLLRY 253
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = -2
Query: 431 GAEAYGTRSRVR*GALYGACP**WIRLRVSWKRR*LASSPESKFRTLPNRNASRRTIS*R 252
GA YG S + C WI ++W+ + L S +K ++ + AS+ ++ +
Sbjct: 16 GAGGYGRSSSSKGSNTVNFCNKSWIGTTLAWESKALKSRHMNKIFSMSVQQASKSKVAVK 75
Query: 251 ----GNSRTQLIWLDEPG*ASSGQRSSLLRSVAPCAVGSSC 141
N++ + L +P + S+ R V P A G +C
Sbjct: 76 PLELDNAKEPPLNLYKPKEPYTATIVSVERLVGPKAPGETC 116
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 414 HTFASTLRRPLWGMPIMMDSTPSFVETSMT 325
H FA TLR L G + +TP +V++ MT
Sbjct: 224 HNFAETLRMELHGEVGVTVATPGWVDSEMT 253
>08_02_0848 -
21835146-21835217,21835712-21835759,21835846-21835943,
21836028-21836136,21837362-21837594,21837664-21837749,
21838038-21838095,21839068-21839135,21839258-21839565
Length = 359
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 67 SESFGASVLQQHRY*VHVHKFPGTMQLD--PTAHGATERNKDER*PEEAHPGSSNQINWV 240
S G+S +QHR V K+P + +D T E D PEE Q+ W
Sbjct: 241 SPHLGSSGNKQHRLLVRDEKYPHIVHVDKGATNSNEAEARSDLYDPEEEMIRGLTQVPWE 300
Query: 241 R 243
R
Sbjct: 301 R 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,933
Number of Sequences: 37544
Number of extensions: 319911
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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