Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31786
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07) 241 3e-64
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40) 117 5e-27
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 30 1.3
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 30 1.3
SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14) 28 4.0
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43) 27 6.9
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 27 9.2
SB_37315| Best HMM Match : DUF1565 (HMM E-Value=5.2) 27 9.2
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.2
SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
Length = 406
Score = 241 bits (589), Expect = 3e-64
Identities = 109/169 (64%), Positives = 140/169 (82%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 VFKLPSTTFIG-EKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNV 178
VF+LP++TFIG E AL LR+I++RLE+ YC+++G++FMFI +C+WIR++ E P
Sbjct: 128 VFRLPNSTFIGGESATALTLRDIVDRLEKTYCHHVGLDFMFIPEKYKCDWIRKKFEMPGH 187
Query: 179 TKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVE 358
+ D+KR +LARL RSTGFE FLA+KWSSEKRFGLEGC++L+PAMK +ID S++LGVE
Sbjct: 188 DVLTRDEKRTLLARLVRSTGFEGFLARKWSSEKRFGLEGCDVLVPAMKAIIDKSSELGVE 247
Query: 359 SIIMGMPHRGRLNVLANVCRKPLHQLFTQF-AGLEAEDDGSGDVKYHLG 502
S++MGMPHRGRL+VLANVCRKPL Q+FTQF LE D+GSGDVKYHLG
Sbjct: 248 SVVMGMPHRGRLDVLANVCRKPLEQIFTQFDPTLEPSDEGSGDVKYHLG 296
>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
Length = 382
Score = 117 bits (282), Expect = 5e-27
Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +2
Query: 116 MFINSLEQCNWIRQRMEP-PNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLE 292
M+I + WI+ R++ N + + D+K+ IL +L + FE FL K+ +KRF LE
Sbjct: 1 MYIRDPKVQEWIKNRLDVNDNQPQFSTDKKKNILKKLNEAVSFETFLHTKYVGQKRFSLE 60
Query: 293 GCEILIPAMKQVIDVSTKLGVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAGLEAEDD 472
GCE IPA+ +I+ + + GVE +MGM HRGRLNVLAN+ K +F++F G + +DD
Sbjct: 61 GCESAIPALDALIEGAAERGVEQFVMGMAHRGRLNVLANIFGKNTQNIFSEFDGKDYDDD 120
Query: 473 --GSGDVKYHLG 502
GDVKYHLG
Sbjct: 121 MYFDGDVKYHLG 132
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 366 MMDSTPSFVETSMTCFIAGIKISHPSKPKRFSEDHFLARKFSNP 235
++ STPS V + K S P KPKRF +D + S+P
Sbjct: 133 LLSSTPSDVSNKDAAKVR--KSSRPPKPKRFGDDDGMDTNLSSP 174
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 64 NSESFGASVLQQHRY*VHVHKFPGTMQLDPTAHG 165
NS+ F + L +H Y H+H P MQLD G
Sbjct: 311 NSQDFQVNALNRHNYYRHIHNAP-PMQLDKELSG 343
>SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 442 CEQLVQRLTAHVREYVEAPSMGHAHNDGFDSEFRGNVDDLLHRRNQNFAPFQTET-LLGG 266
C + L H + P H++ DSE VD RR +FAPF TET +L
Sbjct: 109 CHHTLDTLVNHTTVTNQFPCCVHSNRSCRDSENMKAVD--WFRRLIDFAPFPTETWILDS 166
Query: 265 PFLS 254
P +S
Sbjct: 167 PRIS 170
>SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)
Length = 390
Score = 28.3 bits (60), Expect = 4.0
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = -1
Query: 327 TCFIAGIKISHPSKPKRFSEDHFLARKFSNPVDLVRRARMSLFWSAFIFVTFGGSMRCRI 148
TC + K++ K K F+E H L KF + +RRA+ + AFI ++ G C
Sbjct: 242 TCELCRCKVAIKKKGKPFAEGHTL-HKFYEEKN-IRRAQQKRGFRAFIPLSVRG--ECG- 296
Query: 147 QLHCSREFM-NMNSIPMLLQY---ACSKR 73
+ C+ F N S LL Y +CS++
Sbjct: 297 ESECNANFADNTASCACLLGYNGSSCSEK 325
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 164 EPPNVTKMNADQKRLILARLTRSTGFENFL-AKKWSSEKRFGLEGCEILIPAMK 322
EPPN + + DQKR + S GF N + + +S+E + L P K
Sbjct: 208 EPPNSDRRSPDQKRPRPENIVLSNGFSNDVHGRMFSAEHARAMNILTRLFPEQK 261
>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
Length = 1402
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 362 IIMGMPHRGRLNVLANVCRKPLHQLFTQFAGLEAED 469
IIM R R +V N+CR+ H+LF +F L D
Sbjct: 1284 IIMASRTRSRRDVADNLCRR--HRLFVKFQELNWSD 1317
>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 130 PGTMQLDPTAHGATERNKDER*PEEAHPGSSNQ 228
PG + +P ++E EE HPGS+++
Sbjct: 89 PGENEAEPEGETEEAEEREEESTEEGHPGSTHE 121
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 115 HVHKFPGTMQLDPTAH-GATERNKD 186
H+HK P +++DP H G ++++D
Sbjct: 683 HIHKSPACLKIDPMIHRGLRQKHQD 707
>SB_37315| Best HMM Match : DUF1565 (HMM E-Value=5.2)
Length = 760
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 200 KRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVID--VSTK-LGVESIIM 370
+R++LA G EN + + SEKR+G+E +L+ + ++ +S K G+E +++
Sbjct: 514 ERVLLAGRNEVLG-ENEVVENTMSEKRYGIE--RVLLAGRNEAVENTMSEKHFGIERVLL 570
Query: 371 GMPHRGRLNVLANVCRK 421
GR V+ N K
Sbjct: 571 A----GRNEVVENTMSK 583
>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 684
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Frame = -1
Query: 324 CFIAGIKISHPSKPKRFSEDHFLARK--------FSNPVDLVRRARMSL 202
C I G+ S P K KR +DH + R FS P DL R A L
Sbjct: 313 CDICGMSYSTPGKRKRHMKDHDVNRHECAECGKLFSYPSDLKRHAACHL 361
>SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 319 HRRNQNFAPFQTETLLGGPFLSEEILEPS*SG*TSQDEPLLVS 191
HR N N P T LG P+ ++ S ++ DEP +V+
Sbjct: 187 HRHNFNKYPANLGTTLGKPYDYHSVMHYSRYAFSNDDEPTIVT 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,038
Number of Sequences: 59808
Number of extensions: 358470
Number of successful extensions: 943
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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