Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31783
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    27   1.3  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   2.9  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   3.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   5.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   5.1  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.7  

>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 QRFLRMYTFYIYNLED*THRSAMLLWNYHL 399
           Q+ LR   F  Y  +D  HR  M++  YH+
Sbjct: 9   QKLLRKVDFLNYKNDDNNHRDVMVMRRYHI 38


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 189 IARAASNSVPKYPADFPAALCPNY--PYCW*IHKLPTLINNKSTVF 320
           I+ AA+N V +Y   F  ++  N+  P  W I  L   INN STVF
Sbjct: 410 ISTAAANGVYEY---FDKSMKKNWAGPEHWRIQALRKNINNASTVF 452


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 123 WPSTPHRXMPIPEWVRNPAILPIARAASNSVPKY 224
           WP        +PE       +P+A  A+N +P+Y
Sbjct: 165 WPEDVQENSTLPERKLPKGCMPLAALAANCMPQY 198


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +3

Query: 72  DSTQPFAQTTRSAMLTPWPSTPHRXMPIPEWVRNPAILPIARAASNSVPKYPADFPAALC 251
           D  + F+ +  +    P PS  +   P  E  +N     ++  ASN+VP +  ++P    
Sbjct: 158 DPLRRFSISESAGAAAPTPSPSNSKSPPSENRKNRLQNVLSPIASNNVPDFNQNYPTESN 217

Query: 252 PNY 260
           P +
Sbjct: 218 PMF 220


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 159 EWVRNPAILPIARAASNSVPKYPADFPAALCP 254
           +W    A L +  + ++S PK  AD+ AAL P
Sbjct: 151 KWPSKVAALQLLGSLASSSPKAVADYMAALIP 182


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 265  YG*LGHRAAGKSAGYLGTEFDAARAIGRMAGLRTHSGIGIXLWGVLGQGVSIAERVVWAN 86
            YG  G +A    +G+  T +DA        G    +G+G    G L QG  +  R++ AN
Sbjct: 1122 YGWFGDKAI---SGWSNTNYDAYAYWHVTTG---QTGMGSFSMGTLTQGSFLPIRLIVAN 1175

Query: 85   GWVESGW 65
            G  + G+
Sbjct: 1176 GGGKGGF 1182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,418
Number of Sequences: 5004
Number of extensions: 51416
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)