Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31783
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 31 0.37
AL110478-2|CAB54344.1| 190|Caenorhabditis elegans Hypothetical ... 31 0.65
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 30 0.85
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 29 1.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 29 2.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 2.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 2.6
U80451-1|AAB37835.1| 591|Caenorhabditis elegans Dnaj domain (pr... 28 4.6
Z94800-1|CAB08161.2| 491|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z82288-9|CAB05328.2| 491|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z73104-9|CAA97438.2| 491|Caenorhabditis elegans Hypothetical pr... 27 6.0
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = +3
Query: 54 PASTQPDSTQPFAQTTRSAMLTPWPSTPHRXMPIPEWVRNPAILPIARAASNSVPKYPAD 233
P S P P + T + TP P+TP P P + NP+ P S S P P
Sbjct: 437 PPSAPPTIKFPISTGTSYSSTTP-PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPL 495
Query: 234 FPAALCPNYP 263
P A + P
Sbjct: 496 PPIATPSSVP 505
>AL110478-2|CAB54344.1| 190|Caenorhabditis elegans Hypothetical
protein Y26D4A.6 protein.
Length = 190
Score = 30.7 bits (66), Expect = 0.65
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 92 PNYPFCDADALAKYTPQGNADTRMGAQPSHPADRSSCVEFCAQISG 229
P P CDA Y PQG R+G + + C ++ ISG
Sbjct: 22 PQRPKCDAGWYTSYRPQGIWCLRVGGSLMYKEAATQCAQYGGVISG 67
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 298 STTSQRFLRMYTFYIYNLED*THRSAMLLWNYHLISNKTLTAQHGLGIT 444
S T RF R+Y +Y+ + T+ S + W I + L A+ LG++
Sbjct: 238 SQTFYRFKRLYGYYVLQMYLPTYLSVFISWIAFWIDTRALPARITLGVS 286
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +3
Query: 54 PASTQPDSTQPFAQTTRSAMLTPWPSTPHRXMPIPEWVRNPAILPIARAASNSVPKYPAD 233
P T+P T+P TT + P + P + P P P P + PK +
Sbjct: 372 PPRTEPPKTEP--PTTEPPKIEPPRTEPPKTEPPPT---EP---PKTEPPKTTPPK--TE 421
Query: 234 FPAALCPNYPYCW 272
P PN PYCW
Sbjct: 422 PPTTEPPNIPYCW 434
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/70 (30%), Positives = 27/70 (38%)
Frame = +3
Query: 54 PASTQPDSTQPFAQTTRSAMLTPWPSTPHRXMPIPEWVRNPAILPIARAASNSVPKYPAD 233
P S P P + + TP P+TP P P + NP+ P S S P P
Sbjct: 444 PPSAPPTIKFPISTGPSYSSTTP-PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPL 502
Query: 234 FPAALCPNYP 263
P A + P
Sbjct: 503 PPIATPSSVP 512
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 54 PASTQPDSTQPFAQTTRSAMLTPWPSTPHRXMPIPEWVRNPAILPIARAA 203
PA P P ++TT+S + TP P TP R P V+ PA A+ A
Sbjct: 51 PAPKTPAPKTP-SRTTKSTVDTPAPKTPTRAAKTPV-VKTPAAKTPAKKA 98
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 247 YALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 345
Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 372 YELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 247 YALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 345
Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 372 YELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>U80451-1|AAB37835.1| 591|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 9 protein.
Length = 591
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Frame = +3
Query: 309 STVFADVHFLYI*FRRLNTSISHVTVELSSY-------QQ*NTDRPTRVG--HHYACPSC 461
S + ++V +Y + N SI+ ++V+L++Y R +R+ H++ PSC
Sbjct: 333 SPINSNVRLVYYIRKPENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSC 392
Query: 462 LLYKSINLWA 491
LLY L A
Sbjct: 393 LLYTKFKLKA 402
>Z94800-1|CAB08161.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 247 YALTTHTAGEYTSYLR*STTSQRFLRMYTFYIYNLED*THRSA----MLLWNYHLISNKT 414
Y H +YTS + + T Q+F +T ++ N + T R + WN S +
Sbjct: 311 YVTPLHKLADYTSSISKTNTPQKFSGKFTTFVLNKDQATLRMSSAEKTAEWNTAFDSRRG 370
Query: 415 LTAQHGLGITMHVQ-VASFISPS 480
G+ +Q +A I+ S
Sbjct: 371 FFTSGNYGLNSSIQNIADQITAS 393
>Z82288-9|CAB05328.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 247 YALTTHTAGEYTSYLR*STTSQRFLRMYTFYIYNLED*THRSA----MLLWNYHLISNKT 414
Y H +YTS + + T Q+F +T ++ N + T R + WN S +
Sbjct: 311 YVTPLHKLADYTSSISKTNTPQKFSGKFTTFVLNKDQATLRMSSAEKTAEWNTAFDSRRG 370
Query: 415 LTAQHGLGITMHVQ-VASFISPS 480
G+ +Q +A I+ S
Sbjct: 371 FFTSGNYGLNSSIQNIADQITAS 393
>Z73104-9|CAA97438.2| 491|Caenorhabditis elegans Hypothetical
protein K08D8.6 protein.
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 247 YALTTHTAGEYTSYLR*STTSQRFLRMYTFYIYNLED*THRSA----MLLWNYHLISNKT 414
Y H +YTS + + T Q+F +T ++ N + T R + WN S +
Sbjct: 311 YVTPLHKLADYTSSISKTNTPQKFSGKFTTFVLNKDQATLRMSSAEKTAEWNTAFDSRRG 370
Query: 415 LTAQHGLGITMHVQ-VASFISPS 480
G+ +Q +A I+ S
Sbjct: 371 FFTSGNYGLNSSIQNIADQITAS 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,427
Number of Sequences: 27780
Number of extensions: 304102
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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