Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31782
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 267 LKDSGSNFADGPAVLG-EIFINNFDSYE 187
           ++ SG N  DGPAV+   IF+ +    +
Sbjct: 47  IRPSGENATDGPAVVRVNIFVRSISKID 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 345 RNGNLLYHYVHVHLSAY 295
           RNG L+Y+ +  H++AY
Sbjct: 752 RNGALIYNILPPHVAAY 768


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 267 LKDSGSNFADGPAVL 223
           ++ SG N  DGPA++
Sbjct: 47  IRPSGENATDGPAIV 61


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 282 LFMSCMQRDARVRSDIKGYHF 344
           + +S + R+ RVRSD+K   F
Sbjct: 500 IVLSTILRNFRVRSDVKESEF 520


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 336 NLLY-HYVHVHLSAYMT*IKKI 274
           N+L+ HY H H++   T  KK+
Sbjct: 2   NVLHIHYQHYHITPVFTKQKKV 23


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 249 SIHYLLKCIFFLF 287
           S+HYLL  ++ LF
Sbjct: 46  SLHYLLALLYILF 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,921
Number of Sequences: 438
Number of extensions: 1383
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)