Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31781
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 331 2e-91
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 330 5e-91
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 329 6e-91
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 329 6e-91
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 329 6e-91
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 329 6e-91
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 329 6e-91
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 329 6e-91
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 315 1e-86
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 290 3e-79
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 236 8e-63
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 199 1e-51
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 186 1e-47
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 184 3e-47
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 184 3e-47
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 180 5e-46
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 159 1e-39
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 126 7e-30
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 97 7e-21
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 49 2e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.37
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.1
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 4.6
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 4.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 8.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 8.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 8.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 8.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 8.0
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 331 bits (814), Expect = 2e-91
Identities = 153/156 (98%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 156
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 330 bits (810), Expect = 5e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 156
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 329 bits (809), Expect = 6e-91
Identities = 151/156 (96%), Positives = 155/156 (99%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 408
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 409 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 156
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 315 bits (774), Expect = 1e-86
Identities = 143/154 (92%), Positives = 152/154 (98%)
Frame = +1
Query: 55 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSK 234
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 235 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 414
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 415 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
IMFETFN+PAMYV IQAVLSLYASGRTTGIVLD+
Sbjct: 122 IMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDT 155
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 290 bits (712), Expect = 3e-79
Identities = 133/138 (96%), Positives = 137/138 (99%)
Frame = +1
Query: 103 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIIT 282
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 283 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 462
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 463 AVLSLYASGRTTGIVLDS 516
AVLSLYASGRTTG+VLDS
Sbjct: 125 AVLSLYASGRTTGVVLDS 142
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 236 bits (577), Expect = 8e-63
Identities = 108/112 (96%), Positives = 111/112 (99%)
Frame = +1
Query: 181 MVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 360
MVGMG KDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 361 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDS
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDS 112
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 199 bits (485), Expect = 1e-51
Identities = 90/158 (56%), Positives = 121/158 (76%), Gaps = 4/158 (2%)
Frame = +1
Query: 55 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEA 225
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 226 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 402
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 403 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+VLDS
Sbjct: 122 RSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDS 159
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 186 bits (452), Expect = 1e-47
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 184 bits (448), Expect = 3e-47
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 184 bits (448), Expect = 3e-47
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 180 bits (438), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG KDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDM 297
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 159 bits (385), Expect = 1e-39
Identities = 77/151 (50%), Positives = 105/151 (69%), Gaps = 3/151 (1%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VG-MGXKDSYVGDEAQSKRGIL 246
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 247 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 423
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 424 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
E + ++YVA+QAVL+LYA G TG+V+DS
Sbjct: 129 EQYGFNSIYVAVQAVLTLYAQGLLTGVVVDS 159
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 126 bits (305), Expect = 7e-30
Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 21/177 (11%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQGVM----VGMGX 198
M + A V+DNG+G K G+AG+ P+ + PS V Q + VG G
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 199 KDS--YVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 370 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDS 516
E PLN NRE +IMFE+FN P +Y+A+QAVL+L AS + TG+V+DS
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDS 177
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 97.1 bits (231), Expect = 7e-21
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 17/170 (10%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--RPRHQGVMVGMGXKDSYVGDEAQS 231
D+V+ LV D GS + GFAG++ P+ PS + + + + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 232 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 366
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 367 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 516
+E+ N +A REK+T+IMFE F PA Y++ VLS +A GRT G+++DS
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDS 178
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +1
Query: 64 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGI 243
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 244 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 423
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 424 ETF 432
+ F
Sbjct: 116 DYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +1
Query: 64 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGI 243
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 244 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 423
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 424 ETF 432
+ F
Sbjct: 116 DYF 118
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 37.9 bits (84), Expect = 0.004
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDA--PRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGIL 246
L+++ GS +AG + P++ FP+I R + VG + R I
Sbjct: 181 LILELGSCSIRAGVLTTEPSLPQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRPIS 240
Query: 247 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 426
+E I D+ K EL+V P ++ VLL+ P ++ QI E
Sbjct: 241 ATDPSVERYSIDK--DVLKAVIGKVTKELKVEPWKYKVLLSIPQNIPTVLIGELLQICLE 298
Query: 427 TFNSPAMYVAIQAVLSLYASGRTTGIVLD 513
+ + Q L LYA TTG+V+D
Sbjct: 299 DIKFQSAGITRQPSLILYAYDVTTGVVVD 327
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 80 STMAPACARPVSPATTRPAPSSRP 151
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 71 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 178
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 194 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 84
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 103 KAGFAGDDAPRAVFPSIVGRPRHQG 177
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 80 STMAPACARPVSPATTRPAPSSRPSWVALATRA 178
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 244 GYLSCSGPRHPRRSLXGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 244 GYLSCSGPRHPRRSLXGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 244 GYLSCSGPRHPRRSLXGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 244 GYLSCSGPRHPRRSLXGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 244 GYLSCSGPRHPRRSLXGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,358,158
Number of Sequences: 27780
Number of extensions: 214028
Number of successful extensions: 953
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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