Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31780
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 2e-32
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 37 0.009
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 29 1.7
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 27 7.0
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 27 9.2
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 9.2
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 27 9.2
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 134 bits (325), Expect = 2e-32
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = +2
Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 335 KTTAKGLFKILEKYRPETEAATKERLRKAAEAK 433
+ + LFK+L KYRPET+A K RL AE K
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKK 121
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +2
Query: 353 LFKILEKYRPETEAATKERLRKAAEAK 433
LFK+L KYRPET+A K RL AE K
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKK 30
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 317 FTQTLDKTTAKGLFKILEKYRPETEAATKERLRK 418
FT+ L K K L + ++ RP EA KE+++K
Sbjct: 340 FTEPLSKERWKDLSERIQPLRPNMEAGMKEKIKK 373
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 224 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAATK 403
SR RW Y R+ KA+LQR ++ I Q T + K +L K K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRKKAIVVHEDVK 567
Query: 404 ERLRKAAEAK 433
+ K E++
Sbjct: 568 AAINKHNESE 577
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 277 TSASSESAPSDQPIYPDTG 333
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 271 GCTSASSESAPSDQPIYPDTGQDYS 345
GC ++ PS+ P YP T + YS
Sbjct: 1229 GCRPSNDRVKPSEMPHYPKTTEKYS 1253
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 269 KAVLQRRLKVPPPINQFTQTLDK--TTAKGLFKILEKYRPETEAATKERLRKAAEAKVAT 442
K V Q + P +N TQ ++ T K L +ILE+ PE E T+ E K T
Sbjct: 1732 KPVTQIPEESEPDVNPLTQIPEEIETEVKPLSQILEENGPEVEPVTQIPKESEPEVKPMT 1791
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 373 FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 269
F+QNL L CS ++ G+LV+++ QTTL +L
Sbjct: 28 FIQNLSLFL-CSFLKEHGQLVEKKVDLQTTLLEAL 61
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 DRESSLREEAKELCHWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 318
DR ++ E KE+C+W GH + + + + + + T+++SE S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193
>SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 200 PDQWQSSLASSRREDSRS 147
PDQW+S LAS DS S
Sbjct: 1 PDQWESYLASKSESDSSS 18
>SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 200 PDQWQSSLASSRREDSRS 147
PDQW+S LAS DS S
Sbjct: 1 PDQWESYLASKSESDSSS 18
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 DRESSLREEAKELCHWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 318
DR ++ E KE+C+W GH + + + + + + T++ SE S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 212 TRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPP 307
TRDL F+ +YI I++ + RRL +P P
Sbjct: 29 TRDL-HFMNTEEYIMIRKAAKAIVRRLSLPSP 59
>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Frame = -1
Query: 260 GCGYT----WAILQIWTSHELAECPDQWQSSLASSRREDSRSSW 141
GC YT W Q W ++ L + W+ L + R W
Sbjct: 112 GCSYTFKAKWTSRQCWRTYRLCGKLETWRKWLRCFHLQSQRQQW 155
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 290 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPET--EAATKERLRKAAEA 430
L VPP NQ K K F++ +KY P+T + + E+ ++ +EA
Sbjct: 64 LGVPPNANQ------KEIKKAYFELAKKYHPDTNKDKSASEKFQEVSEA 106
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 317 FTQTLDKTTAKGLFKILEKYRPETEAATKERLRK 418
FT+ L K K L + ++ RP EA K++ +K
Sbjct: 203 FTEPLSKERWKDLSERIQPLRPNMEAGMKQKTKK 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,133
Number of Sequences: 59808
Number of extensions: 226620
Number of successful extensions: 718
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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