Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31780
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           133   6e-32
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   132   1e-31
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa...    29   1.9  
At2g05290.1 68415.m00557 expressed protein similar to zinc finge...    28   2.5  
At5g41270.1 68418.m05016 expressed protein                             26   10.0 
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    26   10.0 

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  133 bits (321), Expect = 6e-32
 Identities = 59/93 (63%), Positives = 75/93 (80%)
 Frame = +2

Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 335 KTTAKGLFKILEKYRPETEAATKERLRKAAEAK 433
           K  A  LFK+L KYRPE +AA KERL K A+A+
Sbjct: 81  KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAE 113


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  132 bits (318), Expect = 1e-31
 Identities = 59/93 (63%), Positives = 74/93 (79%)
 Frame = +2

Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 335 KTTAKGLFKILEKYRPETEAATKERLRKAAEAK 433
           K  A  LFKIL KYRPE +AA KERL   A+A+
Sbjct: 80  KNLATSLFKILLKYRPEDKAAKKERLLNKAQAE 112


>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P98200, Homo sapiens SP|O43520,
           {Arabidopsis thaliana} SP|P98204; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1174

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 329 LDKTTAKGLFKILEKYRPETEAATKERLRKAAEAKVAT 442
           L K     +FK L K+  + E  TKE ++K AEA + T
Sbjct: 602 LSKGADSVMFKRLAKHGRQNERETKEHIKKYAEAGLRT 639


>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 383

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 305 PINQFTQTLDKTTAKGLFKILEKYRPETEAATKERLR 415
           P+N +TQ   K+ AK + +++E    E EA +K+ +R
Sbjct: 132 PVNHYTQATIKSIAKCVGQVIEFPFDENEAQSKDYVR 168


>At5g41270.1 68418.m05016 expressed protein 
          Length = 258

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 323 QTLDKTTAKGLFKILEKYRPETEAATKERLRK 418
           + L + TAKG  K L  ++P+T  +++ +++K
Sbjct: 126 RNLKRGTAKGQMKELYPFKPKTARSSRPKIKK 157


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 271 GCTSASSESAPSDQPIYPDTGQDYS*GPFQDFGE 372
           GC +ASS S+ S+      TG D++   FQ + E
Sbjct: 154 GCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDE 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,472,487
Number of Sequences: 28952
Number of extensions: 162131
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)