Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31779
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.11 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    30   0.18 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.18 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   1.7  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   2.3  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   5.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.1  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    24   9.1  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    24   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 424  ISFTCPALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPN 245
            +S   P + LP   SA++P +P P +  P      P P S  P P+S    P + P +P 
Sbjct: 1017 LSSKAPPVPLP---SADAPPIPVPSTAPP-----VPIPTSTPPVPKSSSGAPSAPPPVPA 1068

Query: 244  PESWCPN 224
            P S  P+
Sbjct: 1069 PSSEIPS 1075



 Score = 25.8 bits (54), Expect = 3.0
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -1

Query: 397  LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 218
            +PKLSS ++P +P P +  P      P+     P P S  P P+S    P+     P P 
Sbjct: 1014 VPKLSS-KAPPVPLPSADAPPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070

Query: 217  S 215
            S
Sbjct: 1071 S 1071


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 213 ARSFRIRSHVQSHRTQSHDRNYRIQGCDFQSRQIRNHDQNCRSRYDQN 70
           AR + + SH+Q+H +   DR YR   C  ++  +R+HD     R  +N
Sbjct: 455 ARKYNVESHIQTHLS---DRPYRCDLC--KAGFVRHHDLKRHLRIHEN 497


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 373 SPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPN 245
           +P  P P+S    P S  P P    P+P S  P P   P +P+
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169



 Score = 26.6 bits (56), Expect = 1.7
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -1

Query: 400 SLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 221
           S P   + +S   P P S  P P    P+P S  P P    P P S P    P +   +P
Sbjct: 126 SAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 220 ES 215
            S
Sbjct: 185 PS 186


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 418 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPESWCPNPESW 281
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN  +   +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -1

Query: 421 SFTCPALSLPKLSS----AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 254
           S  C A  +PK  S    +E     +PE       S C +P    P+  S CPN    PK
Sbjct: 259 SSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHC-SPIDARPSTPS-CPNASISPK 316

Query: 253 LPN 245
            PN
Sbjct: 317 TPN 319


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 370 PKLPNPESWCPNPESWCPNPESWCPNPESW 281
           P    PE W  +   + P+PE+    PE W
Sbjct: 281 PDAVKPEDWLEDEPLYIPDPEA--QKPEDW 308



 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
 Frame = -1

Query: 370 PKLPNPESW---CPN--PESWCPNPESWCPNPESWCPNPESCPKLPNPESW 233
           P    P+ W    P   P+     PE W  +   + P+PE+      PE W
Sbjct: 262 PNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEA----QKPEDW 308


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = -1

Query: 382 SAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPES 215
           S+ S  LPN  +   N     P   S   N  S  P P + P    P SW P   S
Sbjct: 39  SSSSSTLPNYAASSLNSR---PVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNAS 91


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 397 LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 218
           +P L  +E PKL        N       P S      +  PNP+S  +L   ES  PN E
Sbjct: 223 IPFLGESEIPKLLANVEPSANAHGLGIEPAS---KASASSPNPQSGTRLGTKESVAPNNE 279


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 260 PEATESRVVVSKSRIVPEASESGVTSKATE--PRVTT 156
           P +   R   S+S  VPE   +  T   +E  PRVTT
Sbjct: 332 PASAAERAPTSESTTVPETIVASTTKVISEPAPRVTT 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,133
Number of Sequences: 5004
Number of extensions: 26210
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)