Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31776
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.9  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   10.0 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   10.0 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   10.0 

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  LRTGCGHPSRGGGLPSAKQ 135
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  LRTGCGHPSRGGGLPSAKQ 135
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 507 MCFPYNLCRIPRDLSPTQITL 445
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 400  RYTSVYSSAQTSVRGHSNKQLLGVIFGRCNLSPFIELYCTFTIGTSS 260
            RY++  SSA T+    S    + +    C+ +  ++ + T TI  S+
Sbjct: 921  RYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTIDCST 967


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 398 SKVIRNRLSEPGAEN 442
           SK+ R+ LS+PG+ N
Sbjct: 148 SKIGRDELSQPGSLN 162


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 157 GLQSSHIPVWLMVNH 113
           G   +++P W+M NH
Sbjct: 346 GTPQNNVPNWVMGNH 360


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 97  HPSRGGGLPSAKQEYGYFEGHFHP 168
           +PS  G LP +   + +    +HP
Sbjct: 305 YPSTAGFLPPSYHPHQHHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,168
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)