Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31771
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.29
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.6
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 8.3
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.7 bits (61), Expect = 0.29
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y A Y PT + PTSP
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 27.1 bits (57), Expect = 0.90
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1703 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1710 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1717 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 24.2 bits (50), Expect = 6.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 23 TSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
TSP +P S +Y Y PT + PTSP
Sbjct: 1567 TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAIPTSPP 115
S+S TSP P S +Y Y PT + + P
Sbjct: 1577 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSP 1611
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 18 PGHLLKXFPSASITSPTRTDTSPLVMLSPLP 110
P H+ S+ + T+ D PLV SP P
Sbjct: 392 PAHITSITKLQSLENSTKNDNVPLVTHSPSP 422
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 24 HLLKXFPSASITSPT-RTDTSPLV 92
HL++ F + SITSPT T P++
Sbjct: 76 HLIEAFVNVSITSPTLLTSVDPVL 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,189
Number of Sequences: 5004
Number of extensions: 16552
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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