Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31771
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 1.1
04_04_0493 - 25615507-25615524,25615564-25615816,25616127-256162... 28 2.0
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 2.6
02_01_0703 + 5251901-5251950,5252783-5253554 28 2.6
07_01_0084 + 657846-658538,660652-661920 27 4.5
02_05_1180 + 34776151-34776480,34776578-34776760,34776849-347771... 27 4.5
06_01_0863 + 6545563-6546714 26 7.9
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 26 7.9
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT +A PTSP
Sbjct: 1751 SYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSP 1785
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y + Y PT A PTSP
Sbjct: 1758 SYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSP 1792
>04_04_0493 -
25615507-25615524,25615564-25615816,25616127-25616242,
25616410-25616662,25616736-25616823,25616920-25616994,
25617065-25617140,25617528-25617791
Length = 380
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 114 GGEVGIALPVGWY-PFXSAT 58
GG++GIAL + WY PF + T
Sbjct: 256 GGQIGIALSITWYEPFRNTT 275
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT A PTSP
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1723
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S Y GY PT + PTSP
Sbjct: 1703 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1737
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
A S+S TSP P S Y Y PT + PTSP
Sbjct: 1574 ASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSP 1611
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1598 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1632
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1605 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT A PTSP
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSP 1660
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT PTSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSP 1653
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S Y Y PT A PTSP
Sbjct: 1633 SYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSP 1667
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT PTSP
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1730
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 59 VADXNGYQPTGNAIPTSPPVP 121
+A G P GNA+P PP P
Sbjct: 51 IAPPPGRMPMGNAVPDGPPTP 71
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 35 GVPISVNYVADXNGYQPTGNAIP 103
G+P SV + N + PTGN P
Sbjct: 366 GIPYSVKFRMPGNSFVPTGNGAP 388
>02_05_1180 +
34776151-34776480,34776578-34776760,34776849-34777198,
34777430-34777631
Length = 354
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 3 HRAHSPGHLLKXFPSASITSPTRTDTSPLV 92
HRAH L + FP +TS + D +P+V
Sbjct: 268 HRAHLLQMLKELFPQYPVTSKCKDDGNPMV 297
>06_01_0863 + 6545563-6546714
Length = 383
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 88 SGLVSVLVGDVIDADGNXFRRCP 20
SG V V D D DG FRRCP
Sbjct: 350 SGSCKVFVDD--DEDGGAFRRCP 370
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 20 WTSPEGVPISVNYVADXNGY--QPTGNAIPTSPPVP 121
+ +P+GV I+ D GY P G P S PVP
Sbjct: 130 YVNPDGVEITPAVYGDIYGYGYAPYGAYSPASSPVP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,761,386
Number of Sequences: 37544
Number of extensions: 120254
Number of successful extensions: 326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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