Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31771
(363 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 3.4
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 27 6.0
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
A S+S TSP P S +Y Y PT + PTSP
Sbjct: 452 ASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 489
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 462 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 496
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 469 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 503
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 476 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 510
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 483 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 517
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 490 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 524
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 497 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 531
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 504 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 538
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 511 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 545
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 518 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 552
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 525 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 559
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 532 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 566
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 539 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 573
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S +Y Y PT + PTSP
Sbjct: 546 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 580
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 9 AHSPGHLLKXFPSASITSPTRTDTSPLV-MLSPLPHQCL 122
A+ P H SA+ SP+ TDTS +V +S PH +
Sbjct: 2226 ANIPLHSSSVTSSAAFCSPSNTDTSRVVGRVSQAPHNSI 2264
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
A S+S TSP P S +Y + Y P + PTSP
Sbjct: 685 ASPSYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSP 722
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,797,511
Number of Sequences: 59808
Number of extensions: 127892
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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