Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31771
(363 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 29 3.4
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 29 3.4
BC036099-1|AAH36099.1| 716|Homo sapiens ARNT2 protein protein. 28 7.8
AF185610-1|AAG15310.1| 706|Homo sapiens aryl-hydrocarbon recept... 28 7.8
AB002305-1|BAA20766.2| 716|Homo sapiens KIAA0307 protein. 28 7.8
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSP 1774
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1761 SYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP 1795
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP 1802
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTG-NAIPTSP 112
S+S TSP P S +Y Y PT N PTSP
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSP 1760
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSP 1767
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSP 1774
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1761 SYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP 1795
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP 1802
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTG-NAIPTSP 112
S+S TSP P S +Y Y PT N PTSP
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSP 1760
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
S+S TSP P S NY Y PT + PTSP
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSP 1767
>BC036099-1|AAH36099.1| 716|Homo sapiens ARNT2 protein protein.
Length = 716
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAIPTSP 112
+Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 588 SQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 624
>AF185610-1|AAG15310.1| 706|Homo sapiens aryl-hydrocarbon receptor
nuclear translocator 2 protein.
Length = 706
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAIPTSP 112
+Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 577 SQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 613
>AB002305-1|BAA20766.2| 716|Homo sapiens KIAA0307 protein.
Length = 716
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 2 AQGSFSWTSPEGVPISVNYVADXNGYQPTGNAIPTSP 112
+Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 587 SQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 623
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,755,664
Number of Sequences: 237096
Number of extensions: 669348
Number of successful extensions: 5233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5184
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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