Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31771
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical ...    27   3.0  
U70845-1|AAB09098.1|   79|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   5.3  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   5.3  

>AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical
           protein C08G5.5 protein.
          Length = 99

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 29  PEGVP--ISVNYVADXNGYQPTGNAIPTSPPVPXXIARALAY 148
           P G+P  +S +Y A      PT    P++PP+P   +   AY
Sbjct: 44  PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAY 85


>U70845-1|AAB09098.1|   79|Caenorhabditis elegans Hypothetical
           protein F22H10.3 protein.
          Length = 79

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 41  PISVNYVADXNGYQPTGNAIPTSPPVPXXIARALAYXXKNIP 166
           P  V YV    GY P    IP   P+P  +A  +A     +P
Sbjct: 13  PPPVGYVPPPMGYAPPIAPIPMVAPMPVPVAPMMAAPMYGMP 54


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,487,529
Number of Sequences: 27780
Number of extensions: 97832
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)