Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31771
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   2.1  
At1g05790.1 68414.m00605 lipase class 3 family protein contains ...    27   2.8  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 14   FSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            +S TSP   P S  Y     GY PT  A  PTSP
Sbjct: 1566 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1599



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  A  PTSP
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1648



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  A  PTSP
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1655



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  A  PTSP
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1704



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S  Y     GY PT  +  PTSP
Sbjct: 1684 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1718



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP---PVPXXIARALAYXXKNIPL 169
            S+S TSP   P S  Y      Y PT  +  PTSP   P     + ++AY   N  L
Sbjct: 1691 SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARL 1747



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1634



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1641



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S  Y      Y PT  A  PTSP
Sbjct: 1628 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1662



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1697



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11   SFSWTSPEGVPISVNYVADXNGYQPTGNAI-PTSP 112
            S+S TSP   P S +Y      Y PT     PTSP
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1711


>At1g05790.1 68414.m00605 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 687

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 106 SGDSITSGLVSVLVGDVIDADGNXFR 29
           SG+S +SG +S L+GD  + DG   R
Sbjct: 398 SGESESSGFLSSLIGDGCECDGYSIR 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,094,924
Number of Sequences: 28952
Number of extensions: 90080
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)