Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31769
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   2.9  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   6.7  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 156 AVTATIVRSRINNRPLNTPVNFPTSNNSSFHPIS 55
           A+  +   S INN PL  PV+     N+  +P+S
Sbjct: 192 AIPTSEASSSINNTPLQAPVSSFADQNAFTNPLS 225


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 263 PNPCGLVSDPTLRENLTLNRHNCKFNSVA*SGRIFASNNAVH 388
           P P  L  DP LR    L+R+ C   ++A    I  +N+ ++
Sbjct: 65  PTPVTLTYDPELRNLFYLDRNGC-LETIAAERNIVIANHQLY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,740
Number of Sequences: 5004
Number of extensions: 38237
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)