Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31769
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    29   2.9  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    28   5.1  
01_05_0657 + 24034198-24036306                                         28   5.1  
08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942     27   6.8  

>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 240 ERLLIWFTCHITTNSVCWGVFRKRADVIAVTATIV 136
           E + IW      T S+CW + +K  D +  TA ++
Sbjct: 694 EDVQIWHDMAALTKSMCWKMVKKTNDTVDETAMVI 728


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 357 PDYATELNLQLCRFNVKFSRKVGSLTRPQGLGRSIKWV 244
           P +  E N+ L   +VK +  VGSL  P  + +++ W+
Sbjct: 336 PTWLLENNIYLSYLSVKHNSFVGSLILPSTVNQNLSWL 373


>01_05_0657 + 24034198-24036306
          Length = 702

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 419 VRRQVIEDLRASSGELRFNVKSIK 490
           V++ VI+ LR+S+G+L   VKS+K
Sbjct: 472 VKKAVIDTLRSSNGQLTNGVKSLK 495


>08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942
          Length = 172

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -1

Query: 339 LNLQLCRFNVKFSRKVGSLTRPQGLGRSIKWVLE---RLLIW-FTCHITTNSVCWGV 181
           L+  + R +V F  K    T  +G    +KW LE   + L W   C+ITTN V  G+
Sbjct: 115 LHAMMLRHHVSFVLKP---TENEGFDLGVKWSLEWKGKKLPWDLDCNITTNHVYRGM 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,160
Number of Sequences: 37544
Number of extensions: 224091
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)