Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31769
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)                     29   2.3  
SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25)                 27   9.2  

>SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)
          Length = 493

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 121 INSASNYRSGYRNNIRPFPKHTPTNAVRCDMTRKPNQ 231
           I +A N   G    + P+P  + TN   C +TR P +
Sbjct: 418 ITAAKNANGGISTTVDPYPHCSETNFGPCYLTRSPEE 454


>SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 197 LFVVI*HVNQINNLSRTHLIERPNPCGLVSDP 292
           LF ++  V  I+  SR+ L +R  P GL  DP
Sbjct: 51  LFYIVNEVLNIDGYSRSSLSDRSRPAGLKGDP 82


>SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25)
          Length = 736

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 263 PNPCGLVSDPTLRENLTLNRHNCKF 337
           P PC +   PTLR +  + R  C++
Sbjct: 708 PQPCPMPEQPTLRRSERVRRRPCRY 732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,529
Number of Sequences: 59808
Number of extensions: 278761
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)